FATSLiM / fatslim

Main code repository for FATSLiM
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Following error encountered while using -thickness command. #2

Open sviitb opened 7 years ago

sviitb commented 7 years ago

Running command: 'thickness'... This may take some time, be patient! Analysis will be performed using 16 threads. Analysing frame 88/ 126 (time: 34800 ps)... done in 8 ms (Remaining: 0 s) FATAL ERROR: list index out of range

Well, this was unexpected... Congrats, you probably found a bug in FATSLiM! Please report the following traceback to the devs:

Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/init.py", line 132, in main exit_code = _command_registry.run(argv) File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 211, in run cmd_obj.run_with_args(command_args) File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 405, in run_with_args self._run() File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 477, in _run nframes = super(AnalyticalCommand, self)._run() File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 360, in _run output = self.run() File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 578, in run frame_output = self.process_frame(frame) File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 963, in process_frame membrane = membranes[0] IndexError: list index out of range

################# Is there a maximum limit on time or frames that fatslim can process? because when i reduced the number of frames it worked. But i have a large trajectory of 300ns for which i want to find the thickness and apl.

Thanks for help and the code. Best SV