Running command: 'thickness'... This may take some time, be patient!
Analysis will be performed using 16 threads.
Analysing frame 88/ 126 (time: 34800 ps)... done in 8 ms (Remaining: 0 s)
FATAL ERROR: list index out of range
Well, this was unexpected... Congrats, you probably found a bug in FATSLiM!
Please report the following traceback to the devs:
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/init.py", line 132, in main
exit_code = _command_registry.run(argv)
File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 211, in run
cmd_obj.run_with_args(command_args)
File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 405, in run_with_args
self._run()
File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 477, in _run
nframes = super(AnalyticalCommand, self)._run()
File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 360, in _run
output = self.run()
File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 578, in run
frame_output = self.process_frame(frame)
File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 963, in process_frame
membrane = membranes[0]
IndexError: list index out of range
#################
Is there a maximum limit on time or frames that fatslim can process?
because when i reduced the number of frames it worked. But i have a large trajectory of 300ns for which i want to find the thickness and apl.
Running command: 'thickness'... This may take some time, be patient! Analysis will be performed using 16 threads. Analysing frame 88/ 126 (time: 34800 ps)... done in 8 ms (Remaining: 0 s) FATAL ERROR: list index out of range
Well, this was unexpected... Congrats, you probably found a bug in FATSLiM! Please report the following traceback to the devs:
Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/init.py", line 132, in main exit_code = _command_registry.run(argv) File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 211, in run cmd_obj.run_with_args(command_args) File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 405, in run_with_args self._run() File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 477, in _run nframes = super(AnalyticalCommand, self)._run() File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 360, in _run output = self.run() File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 578, in run frame_output = self.process_frame(frame) File "/usr/local/lib/python2.7/dist-packages/fatslim-0.2.1-py2.7-linux-x86_64.egg/fatslimlib/command.py", line 963, in process_frame membrane = membranes[0] IndexError: list index out of range
################# Is there a maximum limit on time or frames that fatslim can process? because when i reduced the number of frames it worked. But i have a large trajectory of 300ns for which i want to find the thickness and apl.
Thanks for help and the code. Best SV