Around 10% of the time, one of the convert_motionxfm2itk nodes will crash. It isn't consistent across subjects and re-runs, and it is usually a different sub-node. Running the command by hand always works, so the issue is probably the mapnode.
subprocess.CalledProcessError: Command '['c3d_affine_tool', '-ref', 'ref_bold.nii.gz', '-src', 'ref_bold.nii.gz', 'MAT_0009', '-fsl2ras', '-oitk', 'affine.txt']' returned non-zero exit status 255.
To reproduce
No response
Preconfig
[ ] default
[ ] abcd-options
[ ] anat-only
[ ] blank
[ ] ccs-options
[X] fmriprep-options
[ ] fx-options
[ ] monkey
[ ] monkey-ABCD
[ ] ndmg
[ ] nhp-macaque
[ ] preproc
[X] rbc-options
[ ] rodent
Custom pipeline configuration
No response
Run command
No response
Expected behavior
Ideally all sub-nodes would run successfully!
Acceptance criteria
[ ] Find fix or work-around that prevents the crash
Describe the bug
Around 10% of the time, one of the
convert_motionxfm2itknodes will crash. It isn't consistent across subjects and re-runs, and it is usually a different sub-node. Running the command by hand always works, so the issue is probably the mapnode.To reproduce
No response
Preconfig
Custom pipeline configuration
No response
Run command
No response
Expected behavior
Ideally all sub-nodes would run successfully!
Acceptance criteria
[ ] Find fix or work-around that prevents the crash
Screenshots
No response
C-PAC version
No response
Container platform
No response
Docker and/or Singularity version(s)
No response
Additional context
No response