✨ Integrate interface for SynthStrip skull-stripping - Githubissues

FCP-INDI / C-PAC

Configurable Pipeline for the Analysis of Connectomes

https://fcp-indi.github.io/

GNU Lesser General Public License v3.0

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✨ Integrate interface for SynthStrip skull-stripping #2118

Open shnizzedy opened 1 month ago

shnizzedy commented 1 month ago

Related problem

This is all coming about because I discovered [FreeSurfer's new brain extraction tool] SynthStrip (https://surfer.nmr.mgh.harvard.edu/docs/synthstrip/), which is just phenomenally consistent, accurate, and fast.

Originally posted by @nimzodisaster in https://github.com/FCP-INDI/C-PAC/issues/2112#issuecomment-2126154730

Proposed feature

Add SynthStrip to the brain extraction options

Acceptance criteria

[ ] SynthStrip can be chosen and configured as a brain extraction option
[ ] When chosen and configured, SynthStrip runs and produces the expected brain extraction outputs

Alternatives

No response

Additional context

No response