FCP-INDI / C-PAC

Configurable Pipeline for the Analysis of Connectomes
https://fcp-indi.github.io/
GNU Lesser General Public License v3.0
64 stars 41 forks source link

Setup: Prepackaged Miniconda Environment (spec file?) #769

Open sgiavasis opened 6 years ago

sgiavasis commented 6 years ago

@as7a5 suggested the creation of a Miniconda environment that can simply be cloned as a CPAC env setup option. We already have all of the needed packages listed in the user guide, so creation of this would be pretty simple.

sgiavasis commented 6 years ago

https://conda.io/docs/user-guide/tasks/manage-environments.html#cloning-an-environment

as7a5 commented 6 years ago

Hi is the environment made with the necessary versions of python modules? Thanks

On Mar 5, 2018, at 1:17 PM, Steve Giavasis notifications@github.com wrote:

https://conda.io/docs/user-guide/tasks/manage-environments.html#cloning-an-environment https://conda.io/docs/user-guide/tasks/manage-environments.html#cloning-an-environment — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/FCP-INDI/C-PAC/issues/769#issuecomment-370512578, or mute the thread https://github.com/notifications/unsubscribe-auth/AMlvekAI7eXm5ENCg9d1i2cX6SFBqMSXks5tbYFFgaJpZM4SN_-y.

as7a5 commented 6 years ago

Hi All, Any update on the conda env for CPAC? I appreciate it.

On Mar 5, 2018, at 1:17 PM, Steve Giavasis notifications@github.com wrote:

https://conda.io/docs/user-guide/tasks/manage-environments.html#cloning-an-environment https://conda.io/docs/user-guide/tasks/manage-environments.html#cloning-an-environment — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/FCP-INDI/C-PAC/issues/769#issuecomment-370512578, or mute the thread https://github.com/notifications/unsubscribe-auth/AMlvekAI7eXm5ENCg9d1i2cX6SFBqMSXks5tbYFFgaJpZM4SN_-y.

sgiavasis commented 6 years ago

Hi @as7a5,

We're currently wrapping up the next release of CPAC, with a lot of good changes. We'll be addressing this directly after, as well as looking into improving other related installation/delivery methods.

Best, Steve