π Pass commandline arguments through to cpac crash
πΈ Add pull / upgrade command
β‘οΈπ³ Stop Docker containers when finished
π½ Handle changes from C-PAC 1.7 to 1.8
Tests
π· Move tests from Travis to GitHub Actions
π· Refactored tests to run on a matrix of [Docker, Singularity] Γ C-PAC v[1.7, 1.8] Γ Python [3.6, 3.7, 3.8]
To do:
[ ] Debug Singularity pull from Docker Hub in GitHub action. It works for me locally and on AWS, but consistently runs out of space on GitHub Actions:
FATAL: While making image from oci registry: error fetching image to cache: while building SIF from layers: packer failed to pack: while unpacking tmpfs: error unpacking rootfs: unpack layer: unpack entry: usr/local/miniconda/lib/python3.7/site-packages/torch/lib/libtorch.so: unpack to regular file: short write: write /tmp/build-temp-279665709/rootfs/usr/local/miniconda/lib/python3.7/site-packages/torch/lib/libtorch.so: no space left on device
[x] I tried running the project locally and verified that there are no
visible errors.
Developer Certificate of Origin
Developer Certificate of Origin
```
Developer Certificate of Origin
Version 1.1
Copyright (C) 2004, 2006 The Linux Foundation and its contributors.
1 Letterman Drive
Suite D4700
San Francisco, CA, 94129
Everyone is permitted to copy and distribute verbatim copies of this
license document, but changing it is not allowed.
Developer's Certificate of Origin 1.1
By making a contribution to this project, I certify that:
(a) The contribution was created in whole or in part by me and I
have the right to submit it under the open source license
indicated in the file; or
(b) The contribution is based upon previous work that, to the best
of my knowledge, is covered under an appropriate open source
license and I have the right under that license to submit that
work with modifications, whether created in whole or in part
by me, under the same open source license (unless I am
permitted to submit under a different license), as indicated
in the file; or
(c) The contribution was provided directly to me by some other
person who certified (a), (b) or (c) and I have not modified
it.
(d) I understand and agree that this project and the contribution
are public and that a record of the contribution (including all
personal information I submit with it, including my sign-off) is
maintained indefinitely and may be redistributed consistent with
this project or the open source license(s) involved.
```
Fixes
Fixes #2 Fixes #3 Fixes #8
Description
cpac crash
pull
/upgrade
commandTests
(e.g., https://github.com/FCP-INDI/cpac/runs/2081157871)
Checklist
Update index.md
).primary
branch of the repository.Developer Certificate of Origin
Developer Certificate of Origin
``` Developer Certificate of Origin Version 1.1 Copyright (C) 2004, 2006 The Linux Foundation and its contributors. 1 Letterman Drive Suite D4700 San Francisco, CA, 94129 Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Developer's Certificate of Origin 1.1 By making a contribution to this project, I certify that: (a) The contribution was created in whole or in part by me and I have the right to submit it under the open source license indicated in the file; or (b) The contribution is based upon previous work that, to the best of my knowledge, is covered under an appropriate open source license and I have the right under that license to submit that work with modifications, whether created in whole or in part by me, under the same open source license (unless I am permitted to submit under a different license), as indicated in the file; or (c) The contribution was provided directly to me by some other person who certified (a), (b) or (c) and I have not modified it. (d) I understand and agree that this project and the contribution are public and that a record of the contribution (including all personal information I submit with it, including my sign-off) is maintained indefinitely and may be redistributed consistent with this project or the open source license(s) involved. ```