shnizzedy
commented
3 years ago Duplicate of https://github.com/shnizzedy/cpac/issues/14
Unfortunately cpac (Python package) doesn't yet support Windows.
However, you should be able to run C-PAC directly in Docker on Windows. The usage is similar, but when running directly you need to specify volume mount bindings (-v /path/on/host:/path/in/container) and you'll probably want to specify keep STDIN open and interactive (-it) and clean up (--rm).
Just getting the help string for run doesn't need any directory bindings, so the equivalent of
cpac run --helpwould be
docker run --rm -it fcpindi/c-pac:latest --help
Hi all,
I am currently trying to try to run the default C-PAC pipeline through a Docker container using C-PAC Python package. However, after installing C-PAC and Docker, I am running into the error - "ModuleNotFoundError: No module named 'pwd' " with stack trace:
(venv) C:\Users\Evan\PycharmProjects\DataScienceProject\venv\TDAfMRI>cpac run --help Traceback (most recent call last): File "C:\Users\Evan\AppData\Local\Programs\Python\Python38\lib\runpy.py", line 194, in _run_module_as_main return _run_code(code, main_globals, None, File "C:\Users\Evan\AppData\Local\Programs\Python\Python38\lib\runpy.py", line 87, in _run_code exec(code, run_globals) File "C:\Users\Evan\PycharmProjects\DataScienceProject\venv\Scripts\cpac.exe__main.py", line 7, in
File "c:\users\evan\pycharmprojects\datascienceproject\venv\lib\site-packages\cpac__main.py", line 397, in run
main(parsed)
File "c:\users\evan\pycharmprojects\datascienceproject\venv\lib\site-packages\cpac\main__.py", line 307, in main
Backends(**arg_vars).run(
File "c:\users\evan\pycharmprojects\datascienceproject\venv\lib\site-packages\cpac\backends\ init__.py", line 20, in Backends
from .docker import Docker
File "c:\users\evan\pycharmprojects\datascienceproject\venv\lib\site-packages\cpac\backends\docker.py", line 6, in
from cpac.backends.platform import Backend, Platform_Meta
File "c:\users\evan\pycharmprojects\datascienceproject\venv\lib\site-packages\cpac\backends\platform.py", line 3, in
import pwd
ModuleNotFoundError: No module named 'pwd'
Does anyone understand this error and how it can be avoided?
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