HechengJin0
commented
3 years ago 02/22/2018 update:
C-PAC Run Info
| Description | monkey preconfig |
| Version | v1.8.0 dev |
| Container | fcpindi/c-pac dev-v1.8 28dd58f2c661 |
| System | lisa |
Results
Connecting brain_mask_unet...
Process Process-1:
Traceback (most recent call last):
File "/usr/local/miniconda/lib/python3.7/multiprocessing/process.py", line 297, in _bootstrap
self.run()
File "/usr/local/miniconda/lib/python3.7/multiprocessing/process.py", line 99, in run
self._target(*self._args, **self._kwargs)
File "/code/CPAC/pipeline/cpac_pipeline.py", line 348, in run_workflow
subject_id, sub_dict, c, p_name, num_ants_cores
File "/code/CPAC/pipeline/cpac_pipeline.py", line 1067, in build_workflow
wf = connect_pipeline(wf, cfg, rpool, pipeline_blocks)
File "/code/CPAC/pipeline/cpac_pipeline.py", line 807, in connect_pipeline
wf = nb.connect_block(wf, cfg, rpool)
File "/code/CPAC/pipeline/engine.py", line 1092, in connect_block
pipe_x, opt)
File "/code/CPAC/anat_preproc/anat_preproc.py", line 950, in brain_mask_unet
wf, outputs = unet_brain_connector(wf, cfg, strat_pool, pipe_num, opt)
File "/code/CPAC/anat_preproc/anat_preproc.py", line 431, in unet_brain_connector
'T1w'])
File "/code/CPAC/pipeline/engine.py", line 269, in get_data
return self.get(resource)['data']
File "/code/CPAC/pipeline/engine.py", line 231, in get
raise Exception("\n[!] C-PAC says: None of the listed "
Exception:
[!] C-PAC says: None of the listed resources are in the resource pool:
['desc-wf_T1w', 'desc-reorient_T1w', 'T1w']
C-PAC Run Info
Results
Include:
id -u:id -g-i --rm --security-opt=apparmor:unconfined -v /data3/cnl/monkey_benchmark/monkey_data_oxford_sub3/origin_data:/bids_dataset -v /data3/cnl/monkey_benchmark/cpac_run/monkey_0218_2021_oxford_cpac18dev_tingmask_benchmark_config:/outputs -v /tmp:/scratch fcpindi/c-pac:dev-v1.8 /bids_dataset /outputs participant --preconfig monkey --save_working_dir --participant_label [a 032182 b]Developers only: