C-PAC v1.8.1-dev ― cpac_fmriprep-4-forks (for NKI data)

Description

Test a mutlicore of a 4-fork pipeline to be used by Columbia on NKI data.

Version

1.8.1-dev (https://github.com/FCP-INDI/C-PAC/tree/45f0aee7d609e502037821dbaf0108fc0f22ed96)

Container

fix_multiple_custom_regressors

System

AWS EC2 c4.8xlarge Ubuntu xenial 16.04.6

Data Size

anat: 256 × 200 × 256, func: 96 × 96 × 47 × 152

Results

    CPAC run complete:

        Pipeline configuration: cpac_fmriprep-4-forks
        Subject workflow: cpac_1019436_1
        Elapsed run time (minutes): 250.41787921587627
        Timing information saved in /media/ebs/Columbia_Nim/nki_forks/2021-08-20/log/cpac_individual_timing_cpac_fmriprep-4-forks.csv
        System time of start:      2021-08-20 20:27:08
        System time of completion: 2021-08-21 00:36:41

Run Command:

cpac \
    --platform docker \
    --tag fix_multiple_custom_regressors \
    -B /media/ebs/CPAC_regtest_pack:/configs \
    -B /media/ebs/Columbia_Nim/configs:/pipelines \
    -B /media/ebs/C-PAC:/code \
    run \
    /media/ebs/Columbia_Nim/nki_forks \
    /media/ebs/Columbia_Nim/nki_forks/2021-08-20 \
    participant \
    --save_working_dir \
    --data_config_file /configs/data_config_regtest.yml \
    --pipeline_file /pipelines/nki_forks.yml \
    --mem_gb 60 --n_cpus 2

Screenshots of brain extraction and registration wireframe overlays from QC pages

N/A ―

generate_quality_control_images: Off

Node timing information

N/A ― the version run did not include https://github.com/FCP-INDI/C-PAC/pull/1549

Extracted time series 1D and nuisance regressors 1D correlations against previous version or some benchmark

N/A ― first run with this data + config

FCP-INDI / cpac_run_logs

C-PAC v1.8.1-dev ― cpac_fmriprep-4-forks (for NKI data) #20