Node: cpac_sub-A00010893_ses-DS2.func_motion_correct_mcflirt_97
Working directory: /output/working/cpac_sub-A00010893_ses-DS2/_scan_rest/func_motion_correct_mcflirt_97
Node inputs:
args = <undefined>
bins = <undefined>
cost = <undefined>
dof = <undefined>
environ = {'FSLOUTPUTTYPE': 'NIFTI_GZ'}
in_file = /output/working/cpac_sub-A00010893_ses-DS2/_scan_rest/func_reorient_93/sub-A00010893_ses-DS2_task-rest_bold_calc_tshift_resample.nii.gz
init = <undefined>
interpolation = <undefined>
mean_vol = <undefined>
out_file = <undefined>
output_type = NIFTI_GZ
ref_file = /output/working/cpac_sub-A00010893_ses-DS2/_scan_rest/func_get_fmriprep_ref_81/ref_bold.nii.gz
ref_vol = <undefined>
rotation = <undefined>
save_mats = True
save_plots = True
save_rms = True
scaling = <undefined>
smooth = <undefined>
stages = <undefined>
stats_imgs = <undefined>
use_contour = <undefined>
use_gradient = <undefined>
Traceback (most recent call last):
File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 46, in run
node.run(updatehash=updatehash)
File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 516, in run
result = self._run_interface(execute=True)
File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_interface
return self._run_command(execute)
File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 764, in _run_command
dirs2keep=dirs2keep,
File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 1527, in clean_working_directory
os.remove(f)
FileNotFoundError: [Errno 2] No such file or directory: '/output/working/cpac_sub-A00010893_ses-DS2/_scan_rest/func_motion_correct_mcflirt_97/sub-A00010893_ses-DS2_task-rest_bold_calc_tshift_resample_mcf.nii.gz.mat/MAT_0735'
When creating this crashfile, the results file corresponding
to the node could not be found.
ls /output/working/cpac_sub-A00010893_ses-DS2/_scan_rest/func_motion_correct_mcflirt_97/sub-A00010893_ses-DS2_task-rest_bold_calc_tshift_resample_mcf.nii.gz.mat:
Description
https://github.com/FCP-INDI/C-PAC/pull/1531 on Brainlife
Version
v1.8.1-dev @ https://github.com/FCP-INDI/C-PAC/commit/53ab684fd21ddc2644b55d3a0c06a2d31db97f24
Container
fix_multiple_custom_regressors
System
brainlife.io
Data Size
No response
Results
https://brainlife.io/project/5f299e1fbeafe973f362a972/process/613fa01c2fe7651a3dd7a27d
crash-20210913-200944-user-func_motion_correct_mcflirt_97.a0-e2636568-1252-41fa-ac10-84fbf70d9b67.txt
:ls /output/working/cpac_sub-A00010893_ses-DS2/_scan_rest/func_motion_correct_mcflirt_97/sub-A00010893_ses-DS2_task-rest_bold_calc_tshift_resample_mcf.nii.gz.mat
:Run Command:
main
:with
config.json
:Pipeline Config
https://github.com/FCP-INDI/C-PAC/blob/53ab684fd21ddc2644b55d3a0c06a2d31db97f24/CPAC/resources/configs/pipeline_config_fmriprep-options.yml
cpac_pipeline_config_2021-09-13T19-05-33Z.yml
Data Config
cpac_data_config_2021-09-13T19-05-33Z.yml
Default Pipeline Diff
cpac_pipeline_config_2021-09-13T19-05-33Z_min.yml
Screenshots of brain extraction and registration wireframe overlays from QC pages
No response
Node timing information
No response
Extracted time series 1D and nuisance regressors 1D correlations against previous version or some benchmark
No response