app-C-PAC-brainlife.io v0.0.0.dev - default pipeline

[shnizzedy]

C-PAC Run Info

**Description**	Default pipeline, 48 hours https://brainlife.io/project/5f299e1fbeafe973f362a972/process/5f981e148226064cdb0a1ae7
**Version**	1.7.1
**Container**	Singularity
**System**	brainlife.io
**Data Size**	how many TRs is your data? (if BOLD)
**Results**	**FAILED: TIMEOUT** at 48 hours. ```BASH ++ Output dataset /output/working/resting_preproc_sub-A00021039_ses-DS2/func_preproc_afni_mean_3dvolreg_0/_scan_rest_acq-645/split/sub-A00021039_ses-DS2_task-rest_acq-645_bold_calc_tshift_resample_2.nii.gz du: cannot access './output/working/resting_preproc_sub-A00021039_ses-DS2/_scan_rest_acq-645/_selector_CSF-2mmE-M_aC-CSF+WM-2mm-DPC5_M-SDB_P-2_BP-B0.01-T0.1/_mask_rois_3mm_mask_file_..cpac_templates..rois_3mm.nii.gz/sca_roi_files_mean_1/mapflow/_sca_roi_files_mean_163/sca_ROI_64.nii.gz': No such file or directory du: cannot access './output/working/resting_preproc_sub-A00021039_ses-DS2/_scan_rest_acq-645/_selector_CSF-2mmE-M_aC-CSF+WM-2mm-DPC5_M-SDB_P-2_BP-B0.01-T0.1/_mask_ho_mask_pad_mask_file_..cpac_templates..ho_mask_pad.nii.gz/sca_tempreg_maps_files_mean_1/mapflow/_sca_tempreg_maps_files_mean_159/.proc-2671_time-1603919333.710648_freq-1.00': No such file or directory du: cannot access './output/working/resting_preproc_sub-A00021039_ses-DS2/_scan_rest_acq-645/_selector_CSF-2mmE-M_aC-CSF+WM-2mm-DPC5_G-M_M-SDB_P-2_BP-B0.01-T0.1/_mask_tt_mask_pad_mask_file_..cpac_templates..tt_mask_pad.nii.gz/sca_roi_files_mean_0/mapflow/_sca_roi_files_mean_068/.proc-2670_time-1603927441.5350695_freq-1.00': No such file or directory du: cannot access './output/working/resting_preproc_sub-A00021039_ses-DS2/_scan_rest_acq-645/_selector_CSF-2mmE-M_aC-CSF+WM-2mm-DPC5_G-M_M-SDB_P-2_BP-B0.01-T0.1/_mask_ho_mask_pad_mask_file_..cpac_templates..ho_mask_pad.nii.gz/sca_roi_files_mean_0/mapflow/_sca_roi_files_mean_088/sca_ROI_3702.nii.gz': No such file or directory du: cannot access './output/working/resting_preproc_sub-A00021039_ses-DS2/_scan_rest_acq-645/_selector_CSF-2mmE-M_aC-CSF+WM-2mm-DPC5_G-M_M-SDB_P-2_BP-B0.01-T0.1/_mask_CC200_mask_file_..cpac_templates..CC200.nii.gz/sca_roi_files_mean_0/mapflow/_sca_roi_files_mean_0178/sca_ROI_179.nii.gz': No such file or directory du: cannot access './output/working/resting_preproc_sub-A00021039_ses-DS2/_scan_rest_acq-645/_selector_CSF-2mmE-M_aC-CSF+WM-2mm-DPC5_M-SDB_P-2_BP-B0.01-T0.1/_mask_ez_mask_pad_mask_file_..cpac_templates..ez_mask_pad.nii.gz/_fwhm_4/sca_tempreg_maps_files_smooth_mean_1/mapflow/_sca_tempreg_maps_files_smooth_mean_194/sca_tempreg_z_maps_roi_95_maths.nii.gz': No such file or directory du: cannot access './output/working/resting_preproc_sub-A00021039_ses-DS2/_scan_rest_acq-645/_selector_CSF-2mmE-M_aC-CSF+WM-2mm-DPC5_M-SDB_P-2_BP-B0.01-T0.1/_mask_CC400_mask_file_..cpac_templates..CC400.nii.gz/_fwhm_4/sca_roi_files_smooth_mean_1/mapflow/_sca_roi_files_smooth_mean_1338/sca_ROI_343_maths.nii.gz': No such file or directory slurmstepd-slurm7-compute1: error: *** JOB 24236 ON slurm7-compute1 CANCELLED AT 2020-10-30T13:24:06 DUE TO TIME LIMIT *** ``` Logs and outputs available at [brainlife.io](https://brainlife.io/project/5f299e1fbeafe973f362a972/process/5f981e148226064cdb0a1ae7). The only crash files are `sinker`s.

Include:

• [x] Run Command:

anat/t1w:
  NKI: A00021039 / DS2 | DS2
func/task: 
  NKI: A00021039 / DS2 rest | DS2,rest,645

• [x] Pipeline Config: default pipeline
• [x] Data Config: BIDS

Developers only:

• [ ] Default Pipeline Diff: n/a

• [x] Screenshots of brain extraction and registration wireframe overlays from QC pages (if available):

• [x] Node timing information: 📎 sorted_node_times.txt