Closed shnizzedy closed 3 years ago
Include:
[x] Pipeline Config
📎 studyforrest_pipelines.yaml
[x] Data Config (can drag file directly into issue)
BIDS directory
. ├── participants.tsv └── sub-17 ├── anat │ ├── sub-17_SWI_defacemask.nii.gz │ ├── sub-17_SWI.json │ ├── sub-17_SWImag.nii.gz │ ├── sub-17_SWIphase.nii.gz │ ├── sub-17_T1w_defacemask.nii.gz │ ├── sub-17_T1w.json │ ├── sub-17_T1w.nii.gz │ ├── sub-17_T2w_defacemask.nii.gz │ ├── sub-17_T2w.json │ └── sub-17_T2w.nii.gz ├── func │ ├── sub-17_ses-localizer_task-movielocalizer_run-1_bold.json │ ├── sub-17_ses-localizer_task-movielocalizer_run-1_bold.nii.gz │ ├── sub-17_ses-localizer_task-movielocalizer_run-1_defacemask.nii.gz │ ├── sub-17_ses-localizer_task-movielocalizer_run-1_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-localizer_task-objectcategories_run-1_bold.json │ ├── sub-17_ses-localizer_task-objectcategories_run-1_bold.nii.gz │ ├── sub-17_ses-localizer_task-objectcategories_run-1_defacemask.nii.gz │ ├── sub-17_ses-localizer_task-objectcategories_run-1_events.tsv │ ├── sub-17_ses-localizer_task-objectcategories_run-1_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-localizer_task-objectcategories_run-2_bold.json │ ├── sub-17_ses-localizer_task-objectcategories_run-2_bold.nii.gz │ ├── sub-17_ses-localizer_task-objectcategories_run-2_defacemask.nii.gz │ ├── sub-17_ses-localizer_task-objectcategories_run-2_events.tsv │ ├── sub-17_ses-localizer_task-objectcategories_run-2_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-localizer_task-objectcategories_run-3_bold.json │ ├── sub-17_ses-localizer_task-objectcategories_run-3_bold.nii.gz │ ├── sub-17_ses-localizer_task-objectcategories_run-3_defacemask.nii.gz │ ├── sub-17_ses-localizer_task-objectcategories_run-3_events.tsv │ ├── sub-17_ses-localizer_task-objectcategories_run-3_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-localizer_task-objectcategories_run-4_bold.json │ ├── sub-17_ses-localizer_task-objectcategories_run-4_bold.nii.gz │ ├── sub-17_ses-localizer_task-objectcategories_run-4_defacemask.nii.gz │ ├── sub-17_ses-localizer_task-objectcategories_run-4_events.tsv │ ├── sub-17_ses-localizer_task-objectcategories_run-4_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-localizer_task-retmapccw_run-1_bold.json │ ├── sub-17_ses-localizer_task-retmapccw_run-1_bold.nii.gz │ ├── sub-17_ses-localizer_task-retmapccw_run-1_defacemask.nii.gz │ ├── sub-17_ses-localizer_task-retmapccw_run-1_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-localizer_task-retmapclw_run-1_bold.json │ ├── sub-17_ses-localizer_task-retmapclw_run-1_bold.nii.gz │ ├── sub-17_ses-localizer_task-retmapclw_run-1_defacemask.nii.gz │ ├── sub-17_ses-localizer_task-retmapclw_run-1_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-localizer_task-retmapcon_run-1_bold.json │ ├── sub-17_ses-localizer_task-retmapcon_run-1_bold.nii.gz │ ├── sub-17_ses-localizer_task-retmapcon_run-1_defacemask.nii.gz │ ├── sub-17_ses-localizer_task-retmapcon_run-1_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-localizer_task-retmapexp_run-1_bold.json │ ├── sub-17_ses-localizer_task-retmapexp_run-1_bold.nii.gz │ ├── sub-17_ses-localizer_task-retmapexp_run-1_defacemask.nii.gz │ ├── sub-17_ses-localizer_task-retmapexp_run-1_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-movie_task-movie_run-1_bold.json │ ├── sub-17_ses-movie_task-movie_run-1_bold.nii.gz │ ├── sub-17_ses-movie_task-movie_run-1_defacemask.nii.gz │ ├── sub-17_ses-movie_task-movie_run-1_events.tsv │ ├── sub-17_ses-movie_task-movie_run-1_eyelinkraw.asc.gz │ ├── sub-17_ses-movie_task-movie_run-1_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-movie_task-movie_run-1_recording-eyegaze_physio.tsv.gz │ ├── sub-17_ses-movie_task-movie_run-2_bold.json │ ├── sub-17_ses-movie_task-movie_run-2_bold.nii.gz │ ├── sub-17_ses-movie_task-movie_run-2_defacemask.nii.gz │ ├── sub-17_ses-movie_task-movie_run-2_events.tsv │ ├── sub-17_ses-movie_task-movie_run-2_eyelinkraw.asc.gz │ ├── sub-17_ses-movie_task-movie_run-2_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-movie_task-movie_run-2_recording-eyegaze_physio.tsv.gz │ ├── sub-17_ses-movie_task-movie_run-3_bold.json │ ├── sub-17_ses-movie_task-movie_run-3_bold.nii.gz │ ├── sub-17_ses-movie_task-movie_run-3_defacemask.nii.gz │ ├── sub-17_ses-movie_task-movie_run-3_events.tsv │ ├── sub-17_ses-movie_task-movie_run-3_eyelinkraw.asc.gz │ ├── sub-17_ses-movie_task-movie_run-3_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-movie_task-movie_run-3_recording-eyegaze_physio.tsv.gz │ ├── sub-17_ses-movie_task-movie_run-4_bold.json │ ├── sub-17_ses-movie_task-movie_run-4_bold.nii.gz │ ├── sub-17_ses-movie_task-movie_run-4_defacemask.nii.gz │ ├── sub-17_ses-movie_task-movie_run-4_events.tsv │ ├── sub-17_ses-movie_task-movie_run-4_eyelinkraw.asc.gz │ ├── sub-17_ses-movie_task-movie_run-4_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-movie_task-movie_run-4_recording-eyegaze_physio.tsv.gz │ ├── sub-17_ses-movie_task-movie_run-5_bold.json │ ├── sub-17_ses-movie_task-movie_run-5_bold.nii.gz │ ├── sub-17_ses-movie_task-movie_run-5_defacemask.nii.gz │ ├── sub-17_ses-movie_task-movie_run-5_events.tsv │ ├── sub-17_ses-movie_task-movie_run-5_eyelinkraw.asc.gz │ ├── sub-17_ses-movie_task-movie_run-5_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-movie_task-movie_run-5_recording-eyegaze_physio.tsv.gz │ ├── sub-17_ses-movie_task-movie_run-6_bold.json │ ├── sub-17_ses-movie_task-movie_run-6_bold.nii.gz │ ├── sub-17_ses-movie_task-movie_run-6_defacemask.nii.gz │ ├── sub-17_ses-movie_task-movie_run-6_events.tsv │ ├── sub-17_ses-movie_task-movie_run-6_eyelinkraw.asc.gz │ ├── sub-17_ses-movie_task-movie_run-6_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-movie_task-movie_run-6_recording-eyegaze_physio.tsv.gz │ ├── sub-17_ses-movie_task-movie_run-7_bold.json │ ├── sub-17_ses-movie_task-movie_run-7_bold.nii.gz │ ├── sub-17_ses-movie_task-movie_run-7_defacemask.nii.gz │ ├── sub-17_ses-movie_task-movie_run-7_events.tsv │ ├── sub-17_ses-movie_task-movie_run-7_eyelinkraw.asc.gz │ ├── sub-17_ses-movie_task-movie_run-7_recording-cardresp_physio.tsv.gz │ ├── sub-17_ses-movie_task-movie_run-7_recording-eyegaze_physio.tsv.gz │ ├── sub-17_ses-movie_task-movie_run-8_bold.json │ ├── sub-17_ses-movie_task-movie_run-8_bold.nii.gz │ ├── sub-17_ses-movie_task-movie_run-8_defacemask.nii.gz │ ├── sub-17_ses-movie_task-movie_run-8_events.tsv │ ├── sub-17_ses-movie_task-movie_run-8_eyelinkraw.asc.gz │ ├── sub-17_ses-movie_task-movie_run-8_recording-cardresp_physio.tsv.gz │ └── sub-17_ses-movie_task-movie_run-8_recording-eyegaze_physio.tsv.gz └── sub-17_ses-movie_task-movie_bold.json
Developers only:
write_debugging_outputs: ([0], [1]) removeWorkingDir: (True, False) n4_bias_field_correction: (False, True) acpc_align: (False, None) acpc_brainsize: (150, None) acpc_template_skull: ('/usr/share/fsl/5.0/data/standard/MNI152_T1_1mm.nii.gz', None) acpc_template_brain: ('None', None) skullstrip_option: (['AFNI'], ['niworkflows-ants']) seg_csf_use_erosion: (False, True) brain_use_erosion: (False, True) runMotionStatisticsFirst: ([0], [1]) motion_estimate_filter: ({'run': [False], 'filter_type': 'notch', 'filter_order': 4, 'breathing_rate_min': None, 'breathing_rate_max': None, 'center_frequency': None, 'filter_bandwidth': None, 'lowpass_cutoff': None}, None) runDespike: ([0], [0, 1]) TR: ('None', 2) n4_correct_func_reg_input: (False, None) functionalMasking: (['AFNI'], ['FSL_AFNI']) Regressors: ([{'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'aCompCor': {'summary': {'method': 'DetrendPC', 'components': 5}, 'tissues': ['WhiteMatter', 'CerebrospinalFluid'], 'extraction_resolution': 2}, 'CerebrospinalFluid': {'summary': 'Mean', 'extraction_resolution': 2, 'erode_mask': True}, 'GlobalSignal': {'summary': 'Mean'}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'aCompCor': {'summary': {'method': 'DetrendPC', 'components': 5}, 'tissues': ['WhiteMatter', 'CerebrospinalFluid'], 'extraction_resolution': 2}, 'CerebrospinalFluid': {'summary': 'Mean', 'extraction_resolution': 2, 'erode_mask': True}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}}], [{'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'aCompCor': {'summary': {'method': 'DetrendPC', 'components': 5}, 'tissues': ['WhiteMatter', 'CerebrospinalFluid'], 'extraction_resolution': 2}, 'GlobalSignal': {'summary': 'Mean'}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'aCompCor': {'summary': {'method': 'DetrendPC', 'components': 5}, 'tissues': ['WhiteMatter', 'CerebrospinalFluid'], 'extraction_resolution': 2}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'GlobalSignal': {'summary': 'Mean'}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'aCompCor': {'summary': {'method': 'DetrendPC', 'components': 5}, 'tissues': ['WhiteMatter', 'CerebrospinalFluid'], 'extraction_resolution': 2}, 'GlobalSignal': {'summary': 'Mean'}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}, 'Censor': {'method': 'SpikeRegression', 'thresholds': [{'type': 'FD_J', 'value': 0.2}], 'number_of_previous_trs_to_censor': 0, 'number_of_subsequent_trs_to_censor': 0}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'aCompCor': {'summary': {'method': 'DetrendPC', 'components': 5}, 'tissues': ['WhiteMatter', 'CerebrospinalFluid'], 'extraction_resolution': 2}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}, 'Censor': {'method': 'SpikeRegression', 'thresholds': [{'type': 'FD_J', 'value': 0.2}], 'number_of_previous_trs_to_censor': 0, 'number_of_subsequent_trs_to_censor': 0}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'GlobalSignal': {'summary': 'Mean'}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}, 'Censor': {'method': 'SpikeRegression', 'thresholds': [{'type': 'FD_J', 'value': 0.2}], 'number_of_previous_trs_to_censor': 0, 'number_of_subsequent_trs_to_censor': 0}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}, 'Censor': {'method': 'SpikeRegression', 'thresholds': [{'type': 'FD_J', 'value': 0.2}], 'number_of_previous_trs_to_censor': 0, 'number_of_subsequent_trs_to_censor': 0}}]) filtering_order: (['After'], ['After', 'Before']) tsa_roi_paths: ([{'/cpac_templates/CC400.nii.gz': 'Avg', '/cpac_templates/aal_mask_pad.nii.gz': 'Avg', '/cpac_templates/CC200.nii.gz': 'Avg', '/cpac_templates/tt_mask_pad.nii.gz': 'Avg', '/cpac_templates/PNAS_Smith09_rsn10.nii.gz': 'SpatialReg', '/cpac_templates/ho_mask_pad.nii.gz': 'Avg', '/cpac_templates/rois_3mm.nii.gz': 'Avg', '/ndmg_atlases/label/Human/AAL_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/CAPRSC_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/DKT_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/DesikanKlein_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Juelich_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/MICCAI_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer1000_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer200_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer300_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer400_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Talairach_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Brodmann_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Desikan_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Glasser_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Slab907_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Yeo-17-liberal_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Yeo-17_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg'}], [{'/cpac_templates/CC400.nii.gz': 'Avg', '/cpac_templates/CC200.nii.gz': 'Avg', '/ndmg_atlases/label/Human/CAPRSC_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer1000_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer200_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer300_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer400_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Desikan_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Glasser_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg'}]) runSCA: ([1], [0]) sca_roi_paths: ([{'/cpac_templates/PNAS_Smith09_rsn10.nii.gz': 'DualReg', '/cpac_templates/CC400.nii.gz': 'Avg, MultReg', '/cpac_templates/ez_mask_pad.nii.gz': 'Avg, MultReg', '/cpac_templates/aal_mask_pad.nii.gz': 'Avg, MultReg', '/cpac_templates/CC200.nii.gz': 'Avg, MultReg', '/cpac_templates/tt_mask_pad.nii.gz': 'Avg, MultReg', '/cpac_templates/ho_mask_pad.nii.gz': 'Avg, MultReg', '/cpac_templates/rois_3mm.nii.gz': 'Avg, MultReg'}], [{'/cpac_templates/PNAS_Smith09_rsn10.nii.gz': 'DualReg'}]) runVMHC: ([1], [0]) runALFF: ([1], [0]) runReHo: ([1], [0]) runNetworkCentrality: ([1], [0]) run_smoothing: ([1], [0]) |
C-PAC Run Info
Include:
[x] Pipeline Config
📎 studyforrest_pipelines.yaml
[x] Data Config (can drag file directly into issue)
BIDS directory
Developers only:
write_debugging_outputs: ([0], [1]) removeWorkingDir: (True, False) n4_bias_field_correction: (False, True) acpc_align: (False, None) acpc_brainsize: (150, None) acpc_template_skull: ('/usr/share/fsl/5.0/data/standard/MNI152_T1_1mm.nii.gz', None) acpc_template_brain: ('None', None) skullstrip_option: (['AFNI'], ['niworkflows-ants']) seg_csf_use_erosion: (False, True) brain_use_erosion: (False, True) runMotionStatisticsFirst: ([0], [1]) motion_estimate_filter: ({'run': [False], 'filter_type': 'notch', 'filter_order': 4, 'breathing_rate_min': None, 'breathing_rate_max': None, 'center_frequency': None, 'filter_bandwidth': None, 'lowpass_cutoff': None}, None) runDespike: ([0], [0, 1]) TR: ('None', 2) n4_correct_func_reg_input: (False, None) functionalMasking: (['AFNI'], ['FSL_AFNI']) Regressors: ([{'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'aCompCor': {'summary': {'method': 'DetrendPC', 'components': 5}, 'tissues': ['WhiteMatter', 'CerebrospinalFluid'], 'extraction_resolution': 2}, 'CerebrospinalFluid': {'summary': 'Mean', 'extraction_resolution': 2, 'erode_mask': True}, 'GlobalSignal': {'summary': 'Mean'}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'aCompCor': {'summary': {'method': 'DetrendPC', 'components': 5}, 'tissues': ['WhiteMatter', 'CerebrospinalFluid'], 'extraction_resolution': 2}, 'CerebrospinalFluid': {'summary': 'Mean', 'extraction_resolution': 2, 'erode_mask': True}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}}], [{'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'aCompCor': {'summary': {'method': 'DetrendPC', 'components': 5}, 'tissues': ['WhiteMatter', 'CerebrospinalFluid'], 'extraction_resolution': 2}, 'GlobalSignal': {'summary': 'Mean'}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'aCompCor': {'summary': {'method': 'DetrendPC', 'components': 5}, 'tissues': ['WhiteMatter', 'CerebrospinalFluid'], 'extraction_resolution': 2}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'GlobalSignal': {'summary': 'Mean'}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'aCompCor': {'summary': {'method': 'DetrendPC', 'components': 5}, 'tissues': ['WhiteMatter', 'CerebrospinalFluid'], 'extraction_resolution': 2}, 'GlobalSignal': {'summary': 'Mean'}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}, 'Censor': {'method': 'SpikeRegression', 'thresholds': [{'type': 'FD_J', 'value': 0.2}], 'number_of_previous_trs_to_censor': 0, 'number_of_subsequent_trs_to_censor': 0}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'aCompCor': {'summary': {'method': 'DetrendPC', 'components': 5}, 'tissues': ['WhiteMatter', 'CerebrospinalFluid'], 'extraction_resolution': 2}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}, 'Censor': {'method': 'SpikeRegression', 'thresholds': [{'type': 'FD_J', 'value': 0.2}], 'number_of_previous_trs_to_censor': 0, 'number_of_subsequent_trs_to_censor': 0}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'GlobalSignal': {'summary': 'Mean'}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}, 'Censor': {'method': 'SpikeRegression', 'thresholds': [{'type': 'FD_J', 'value': 0.2}], 'number_of_previous_trs_to_censor': 0, 'number_of_subsequent_trs_to_censor': 0}}, {'Motion': {'include_delayed': True, 'include_squared': True, 'include_delayed_squared': True}, 'PolyOrt': {'degree': 2}, 'Bandpass': {'bottom_frequency': 0.01, 'top_frequency': 0.1}, 'Censor': {'method': 'SpikeRegression', 'thresholds': [{'type': 'FD_J', 'value': 0.2}], 'number_of_previous_trs_to_censor': 0, 'number_of_subsequent_trs_to_censor': 0}}]) filtering_order: (['After'], ['After', 'Before']) tsa_roi_paths: ([{'/cpac_templates/CC400.nii.gz': 'Avg', '/cpac_templates/aal_mask_pad.nii.gz': 'Avg', '/cpac_templates/CC200.nii.gz': 'Avg', '/cpac_templates/tt_mask_pad.nii.gz': 'Avg', '/cpac_templates/PNAS_Smith09_rsn10.nii.gz': 'SpatialReg', '/cpac_templates/ho_mask_pad.nii.gz': 'Avg', '/cpac_templates/rois_3mm.nii.gz': 'Avg', '/ndmg_atlases/label/Human/AAL_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/CAPRSC_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/DKT_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/DesikanKlein_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Juelich_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/MICCAI_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer1000_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer200_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer300_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer400_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Talairach_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Brodmann_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Desikan_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Glasser_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Slab907_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Yeo-17-liberal_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Yeo-17_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg'}], [{'/cpac_templates/CC400.nii.gz': 'Avg', '/cpac_templates/CC200.nii.gz': 'Avg', '/ndmg_atlases/label/Human/CAPRSC_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer1000_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer200_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer300_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Schaefer400_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Desikan_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg', '/ndmg_atlases/label/Human/Glasser_space-MNI152NLin6_res-1x1x1.nii.gz': 'Avg'}]) runSCA: ([1], [0]) sca_roi_paths: ([{'/cpac_templates/PNAS_Smith09_rsn10.nii.gz': 'DualReg', '/cpac_templates/CC400.nii.gz': 'Avg, MultReg', '/cpac_templates/ez_mask_pad.nii.gz': 'Avg, MultReg', '/cpac_templates/aal_mask_pad.nii.gz': 'Avg, MultReg', '/cpac_templates/CC200.nii.gz': 'Avg, MultReg', '/cpac_templates/tt_mask_pad.nii.gz': 'Avg, MultReg', '/cpac_templates/ho_mask_pad.nii.gz': 'Avg, MultReg', '/cpac_templates/rois_3mm.nii.gz': 'Avg, MultReg'}], [{'/cpac_templates/PNAS_Smith09_rsn10.nii.gz': 'DualReg'}]) runVMHC: ([1], [0]) runALFF: ([1], [0]) runReHo: ([1], [0]) runNetworkCentrality: ([1], [0]) run_smoothing: ([1], [0]) |