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FCS-analysis / PyCorrFit

data analysis and fitting software for fluorescence correlation spectroscopy (FCS)
pycorrfit.craban.de
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Confocor FCS file format #37

Open paulmueller opened 11 years ago

paulmueller commented 11 years ago

http://www.lfd.uci.edu/~gohlke/code/fcsfiles.py.html

Christoph Gohlke wrote a python script for loading Confocor data files. The script works with dictionaries and recurses through the entire file. This might be a better solution than the current (0.7.8) implementation.

paulmueller commented 11 years ago

This sdt file format might also prove useful.

http://www.lfd.uci.edu/~gohlke/code/sdtfile.py.html

Any users interested?

nashv commented 8 years ago

Fcs Diagram 30.txt

Rename to *.fcs I am interested, and I see that this already supported in PyCorrFit. However, I have a set of Zeiss Confocor3

files that simply will not load. A sample is attached.

dimi-huer commented 5 years ago

We probably had the same issue and it was due to the different name of the Auto Correlation detector. So, if you either change the parser in that line or the name within the files (at all measurements). The files loaded afterwards.

https://github.com/FCS-analysis/PyCorrFit/blob/c784b6b655bb213c787348b781e70e79a5c1b94e/pycorrfit/readfiles/read_FCS_Confocor3.py#L86

paulmueller commented 5 years ago

Yes, it looks like PyCorrFit is expecting enumerated integer channel names.

@nashv Is it OK with you to put your dataset in the public domain (https://creativecommons.org/choose/zero/). I would need that for testing.