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FDA / openfda

openFDA is an FDA project to provide open APIs, raw data downloads, documentation and examples, and a developer community for an important collection of FDA public datasets.
https://open.fda.gov
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Detailed Instructions #147

Closed Mariano215 closed 3 years ago

Mariano215 commented 3 years ago

I'd like step by step instructions for setting up OpenFDA in my lab.

The goal is to have the available pipelines populate and update the data in Elasticsearch so that I can make use of Kibana for research. I have been unsuccessful in attempting this myself and would greatly appreciate any walk-through, detailed setup instructions, or other advice.

Currently it does not seem to be working for me.

dkrylovsb commented 3 years ago

@Mariano215 Do you need to be able to run all available pipelines or do you have a specific subset in mind?

Mariano215 commented 3 years ago

Thanks for the quick response. I'm interested in 510k and Device Adverse Events if it's possible to limit it to those.

On Thu, Dec 10, 2020 at 1:39 PM Denis Krylov notifications@github.com wrote:

@Mariano215 https://github.com/Mariano215 Do you need to be able to run all available pipelines or do you have a specific subset in mind?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/FDA/openfda/issues/147#issuecomment-742715073, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJHB2ZECTABXVQC6YOOXV6LSUEIXHANCNFSM4UVNECVQ .

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dkrylovsb commented 3 years ago

OK, we'll work on adding those two to the Docker Compose setup and post back once done.

dkrylovsb commented 3 years ago

The Docker Compose setup has been updated to include 510K and Device Events in the list of pipelines to run. README has been updated as well. If you need to be able to run the pipelines outside of Docker you can disassemble the Docker Compose setup to see what's going on under the hood and replicate the steps in your own environment. Feel free to reach out for help if needed.