This changes autoreporting to use good_cs instead of low_purity in both loading the data (in gws_fetch) as well as in top report building. R6 v 2.0 reports were built using this.
The code is quite ugly in parts of gws_fetch, but it seems to work.
This also fixes one bug in top_report.py where gnomad cols are not added due to a typo in gnomad cols variable.
Lipastomies
commented
3 years ago
This changes autoreporting to use good_cs instead of low_purity in both loading the data (in gws_fetch) as well as in top report building. R6 v 2.0 reports were built using this.
The code is quite ugly in parts of gws_fetch, but it seems to work.
This also fixes one bug in top_report.py where gnomad cols are not added due to a typo in gnomad cols variable.
Fixes #156 #157 #158