FINNGEN / autoreporting

MIT License
0 stars 1 forks source link

Tabix to pysam #165

Closed Lipastomies closed 3 years ago

Lipastomies commented 3 years ago

Pytabix has been a bit of a pain to work with, instead let's use pysam, the python bindings around SAMtools.

I replaced the functions using tabix with identical pysam versions & added some tests. This does not affect any functionality,