If phenotype info file is missing (set as "gs://misc-analysis/EMPTY_FILE" in the json), the missing output is not handled correctly and the empty file is read causing pandas.errors.EmptyDataError.
This PR fixes that by handling the empty file same as is done elsewhere in the wdl.
If phenotype info file is missing (set as "gs://misc-analysis/EMPTY_FILE" in the json), the missing output is not handled correctly and the empty file is read causing
pandas.errors.EmptyDataError.This PR fixes that by handling the empty file same as is done elsewhere in the wdl.