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FINNGEN / autoreporting

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Change variant identifier to be consistent with other data in FinnGen project #54

Open Lipastomies opened 4 years ago

Lipastomies commented 4 years ago

Current variant or group ids are of form chrCHR_POS_REF_ALT, e.g. 'chr1_100001_A_T'. This is not in line with other data, where identifiers such as 'CHR:POS:REF:ALT' and 'CHR-POS-REF-ALT' are being used.

Determine the proper identifier and replace current identifier format with that.

Lipastomies commented 4 years ago

NOTE

Currently LD access using PLINK requires the current variant identifiers. Some changes are necessary before this change can be done.