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FINNGEN / regenie-pipelines

WDL pipelines for running regenie
MIT License
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could we have access to some example data? #46

Open linminhtoo opened 9 months ago

linminhtoo commented 9 months ago

hi, i tried running

gcloud storage cp gs://r7_data/pheno/R7_COV_PHENO_V2.txt.gz .

this is the example file in the README

but it says that my gmail doesn't have access:

ERROR: (gcloud.storage.cp) HTTPError 403: linmin.htoo@gmail.com does not have storage.objects.get access to the Google Cloud Storage object. Permission 'storage.objects.get' denied on resource (or it may not exist).
Fedja commented 9 months ago

hi,

Those data are private. The input format is regenie format described here https://rgcgithub.github.io/regenie/options/#phenotype-file-format and needs to contain all used covariates and phenotype

linminhtoo commented 8 months ago

hi,

Those data are private. The input format is regenie format described here https://rgcgithub.github.io/regenie/options/#phenotype-file-format and needs to contain all used covariates and phenotype

Hi, thanks for ur response. We're a few engineers with not much domain expertise but we just want to run the pipeline on some small sample data and do some automation with it. Would it be possible at all to share some small toy data? That would be really helpful