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FNNDSC / ami

AMI Medical Imaging (AMI) JS ToolKit
https://fnndsc.github.io/ami/#viewers_upload
MIT License
715 stars 213 forks source link

Yarn run example error Ubuntu #164

Closed Doomedfajita closed 7 years ago

Doomedfajita commented 7 years ago

Hi!

I keep getting this error when attempting to "yarn run example ":

module.js:471 throw err; ^

Error: Cannot find module 'shelljs/global' at Function.Module._resolveFilename (module.js:469:15) at Function.Module._load (module.js:417:25) at Module.require (module.js:497:17) at require (internal/module.js:20:19) at Object. (/home/sead/Desktop/ami/ami/scripts/router.js:1:63) at Module._compile (module.js:570:32) at Object.Module._extensions..js (module.js:579:10) at Module.load (module.js:487:32) at tryModuleLoad (module.js:446:12) at Function.Module._load (module.js:438:3)

I'm running Ubuntu 14.04 64 bit.

I installed shelljs - "sudo npm install -g shelljs" successfully.

Any help would be much appreciated!!!!

NicolasRannou commented 7 years ago

Can you please provide all the commands you typed to install AMI?

NicolasRannou commented 7 years ago

Googling around, it may be at NPM misconfiguration on your machine.

NicolasRannou commented 7 years ago

You shouldn't have to install "shelljs", it is already part of the NPM dependencies (https://github.com/FNNDSC/ami/blob/dev/package.json#L89)

Doomedfajita commented 7 years ago

The commands are as follows, after I installed node and yarn :

$> git clone https://github.com/FNNDSC/ami.git
$> cd ami
$> yarn run example geometries_slices

On Mon, Jul 10, 2017 at 4:49 PM, Nicolas Rannou notifications@github.com wrote:

You shouldn't have to install "shelljs", it is already part of the NPM dependencies (https://github.com/FNNDSC/ami/blob/dev/package.json#L89)

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/FNNDSC/ami/issues/164#issuecomment-314234433, or mute the thread https://github.com/notifications/unsubscribe-auth/APKQb-_JBbeEQim_iK9a-0WFYY_j97rEks5sMo5NgaJpZM4OS6bD .

Doomedfajita commented 7 years ago

And I figured that shelljs came packaged, I couldn't find any way to remedy it though.

On Tue, Jul 11, 2017 at 1:18 PM, Sead Niksic saybayn11@gmail.com wrote:

The commands are as follows, after I installed node and yarn :

git clone https://github.com/FNNDSC/ami.git

cd ami

yarn run example geometries_slices

On Mon, Jul 10, 2017 at 4:49 PM, Nicolas Rannou notifications@github.com wrote:

You shouldn't have to install "shelljs", it is already part of the NPM dependencies (https://github.com/FNNDSC/ami/blob/dev/package.json#L89)

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/FNNDSC/ami/issues/164#issuecomment-314234433, or mute the thread https://github.com/notifications/unsubscribe-auth/APKQb-_JBbeEQim_iK9a-0WFYY_j97rEks5sMo5NgaJpZM4OS6bD .

Doomedfajita commented 7 years ago

I'm running Ubuntu in a virtual machine, could that be an issue?

On Tue, Jul 11, 2017 at 1:19 PM, Sead Niksic saybayn11@gmail.com wrote:

And I figured that shelljs came packaged, I couldn't find any way to remedy it though.

On Tue, Jul 11, 2017 at 1:18 PM, Sead Niksic saybayn11@gmail.com wrote:

The commands are as follows, after I installed node and yarn :

git clone https://github.com/FNNDSC/ami.git

cd ami

yarn run example geometries_slices

On Mon, Jul 10, 2017 at 4:49 PM, Nicolas Rannou <notifications@github.com

wrote:

You shouldn't have to install "shelljs", it is already part of the NPM dependencies (https://github.com/FNNDSC/ami/blob/dev/package.json#L89)

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/FNNDSC/ami/issues/164#issuecomment-314234433, or mute the thread https://github.com/notifications/unsubscribe-auth/APKQb-_JBbeEQim_iK9a-0WFYY_j97rEks5sMo5NgaJpZM4OS6bD .

NicolasRannou commented 7 years ago

@Doomedfajita , it seems you are missing one step during installation:

$> git clone https://github.com/FNNDSC/ami.git
$> cd ami
$> yarn install --ignore-optional
$> yarn run example geometries_slices
Doomedfajita commented 7 years ago

I'm sorry to be a bother - which step would that be? It seems as though they are the same.

On Jul 12, 2017 6:30 AM, "Nicolas Rannou" notifications@github.com wrote:

@Doomedfajita https://github.com/doomedfajita , it seems you are missing one step during installation:

$> git clone https://github.com/FNNDSC/ami.git $> cd ami $> yarn run example geometries_slices

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/FNNDSC/ami/issues/164#issuecomment-314721836, or mute the thread https://github.com/notifications/unsubscribe-auth/APKQb5bRpr8sCKaFU0WAbh-Bc5F9tDqFks5sNKAygaJpZM4OS6bD .

NicolasRannou commented 7 years ago

You didn't run 'yarn install --ignore-optional'

Doomedfajita commented 7 years ago

I figured it out! Thank you for all your help. I originally had included the "yarn install --ignore-optional", but I didn't realize yarn was using an older version (0.22). It kept throwing an error about --ignore-option not a valid command. I updated it to 0.275 manually, and then used the instructions and it worked!

On Wed, Jul 12, 2017 at 10:08 AM, Nicolas Rannou notifications@github.com wrote:

You didn't run 'yarn install --ignore-optional'

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/FNNDSC/ami/issues/164#issuecomment-314780538, or mute the thread https://github.com/notifications/unsubscribe-auth/APKQb7pEezyBk5pDipkOFKKQEG_fXEoOks5sNNNfgaJpZM4OS6bD .