NicolasRannou
commented
11 years ago issue was in the underlying bash scripts, looking for 1.dcm which do not exist anymore. looking for .dcm now!
Closed NicolasRannou closed 11 years ago
NicolasRannou
commented
11 years ago issue was in the underlying bash scripts, looking for 1.dcm which do not exist anymore. looking for .dcm now!
user: bahtam
param:--dti /chb/users/chris/users/bahtam/search/2013_02_05T20_07_11.170Z-275/0/4466079-46/2013.01.26-006Y-MR_Brain_w_o_Contrast-72/DIFFUSION_HighResShort-DIFFUSION_HighRes_Short-867 --anglethreshold 45 --recalgo 2nd_Order_Runga_Hutta --immodel HARDI --m1 DWI --m1lowerthreshold 0 --m1upperthreshold 1 --m2 FA --m2lowerthreshold 0 --m2upperthreshold 1 --b0 1 --output /chb/users/chris/users/bahtam/tractography/4466079_HARDIRK2_AT45-277/0/
command:/net/pretoria/local_mount/space/pretoria/2/chb/users/chris/src/chrisreloaded/plugins/tractography/tract_meta.bash.wrapper '/chb/arch/scripts/tract_meta.bash -v 10 -f -O /chb/users/chris/users/bahtam/tractography/4466079_HARDIRK2_AT45-277/0/ -L /chb/users/chris/users/bahtam/tractography/4466079_HARDIRK2_AT45-277/0/ -R -log -D /chb/users/chris/users/bahtam/search/2013_02_05T20_07_11.170Z-275/0/4466079-46/2013.01.26-006Y-MR_Brain_w_o_Contrast-72/DIFFUSION_HighResShort-DIFFUSION_HighRes_Short-867 -d 39-1.3.12.2.1107.5.2.32.35201.2013012613432499960039646.dcm -t 12 -k --m1 DWI --m1-lower-threshold 0 --m1-upper-threshold 1 --angle-threshold 45 -A rk2 -I hardi'