BCH <-> BRAIN CONNECTION TESTS

NicolasRannou commented 9 years ago

List all tests done.

TODO:

emailing service on brain up?

NicolasRannou commented 9 years ago

BCH CHRIS CONFIGURATION: GOOD

"BRAIN" => serialize(array(^M
    "sshhost" => "brain.chpc.ac.za",^M
    "sshport" => "22",^M
    "dicomhost" => "brain.chpc.ac.za",^M
    "dicomport" => "10502",^M
    "src"  => "/home/chris/src/chrisreloaded"),
"BCH" => serialize(array(^M
    "sshhost" => "localhost",^M
    "sshport" => "22",^M
    "dicomhost" => "pretoria",^M
    "dicomport" => "10401",^M
    "src"  => "/neuro/users/chris/src/chrisreloaded"))

NicolasRannou commented 9 years ago

BRAIN CONFIGURATION FILE: GOOD

"BCH" => serialize(array(
    "sshhost" => "locahost",
    "sshport" => "2214",
    "dicomhost" => "brain.chpc.ac.za",
    "dicomport" => "10402",
    "src"  => "/neuro/users/chris/src/chrisreloaded")),
"BRAIN" => serialize(array(
    "sshhost" => "localhost",
    "sshport" => "22",
    "dicomhost" => "brain.chpc.ac.za",
    "dicomport" => "10502",
    "src"  => "/home/chris/src/chrisreloaded"))

NicolasRannou commented 9 years ago

PASSWORDLESS SSH: GOOD

BCH -> BRAIN

chris@chris$>ssh chris@brain.chpc.ac.za

BRAIN -> BCH

[chris@brain:x86_64-Linux]~$>ssh -p 2214 localhost

NicolasRannou commented 9 years ago

CHRIS PUSH: BCH->BRAIN

TODO, test the mail command on brain. Can it send to the outside world?

screen shot 2015-03-11 at 12 30 21 pm

Data in expected location on BRAIN: /home/chris/tmp/Freesurfer.zip Email link working: @rudolphpienaar?

screen shot 2015-03-11 at 12 30 50 pm /home/chris/tmp/Freesurfer.zip Email link working: NO, email not sent for npm.rannou@...

NicolasRannou commented 9 years ago

CHRIS PUSH: BRAIN -> BCH screen shot 2015-03-11 at 1 13 02 pm Data in expected location on BCH: /tmp/rpienaar.zip Email link working: @rudolphpienaar

screen shot 2015-03-11 at 1 08 11 pm Data in expected location on BCH: /tmp/chrisRun.zip Email link working: Yes

NicolasRannou commented 9 years ago

PACS PUSH: BCH -> BRAIN

screen shot 2015-03-11 at 4 56 13 pm Data in expected location on BRAIN: /hom/chris/data/RENE_TEST* Email link working:?

screen shot 2015-03-11 at 4 58 43 pm Data in expected location on BRAIN: /home/chris/data/nvp-5/2015.01.26-000D-nvp* Email link working:?

NicolasRannou commented 9 years ago

ANONYMIZATION ERROR ON BRAIN:

There is a /neuro tree dependency...

/lustre/SCRATCH5/cubic/chris/packages/scripts/neuro-fs: line 133: /neuro/arch/x86_64-Linux/packages/freesurfer/stable/SetUpFreeSurfer.sh: No such file or directory
/lustre/SCRATCH5/cubic/chris/packages/scripts/neuro-fs: line 134: /neuro/arch/x86_64-Linux/packages/fsl/current/etc/fslconf/fsl.sh: No such file or directory
dcmanon_meta.bash -v 10 -K /neuro/users/chris/anonymize_key/CA_cert.pem -D /home/chris//tmp/3_11_2015_17_30_53-18/0_2015.01.26-000D-OR_NEURO_BRAIN-2865/_chrisInput_//home/chris/users/rpienaar/file_browser/3_11_2015_17_26_37-16/0_2015-03-11-12-26-54/tmp/PROFILE_26_JAN_2015-1555/2015.01.26-000D-OR_NEURO_BRAIN-2865/localizer-localizer-34153 -O /home/chris//tmp/3_11_2015_17_30_53-18/0_2015.01.26-000D-OR_NEURO_BRAIN-2865/localizer-localizer-34153-20150311183119618574-anon

rudolphpienaar commented 9 years ago

Will look at this tomorrow... Ugh... previously we probably edited the neuro-fs on the remote cluster, and probably since then we pulled a new update and it reverted.

NicolasRannou commented 9 years ago

@rudolphpienaar the anonymization is working now

only pending thing is the emailing service which doens't seem to work on brain, did not investigate yet

NicolasRannou commented 9 years ago

PACS PUSH: BRAIN -> BCH

screen shot 2015-03-17 at 10 32 37 am Data in expected location on BCH: /neuro/users/chris/data/PROFILE_26_JAN_2015-1555 Email link working:?

screen shot 2015-03-17 at 10 32 52 am Data in expected location on BCH: /neuro/users/chris/data/nvp-264/2015.01.26-000D-nvp-3002 Email link working:?

FNNDSC / projectman

BCH <-> BRAIN CONNECTION TESTS #56