FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
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Various fixes, primarliy related to downloading GTDB genomes #64
Added display message to user about missing genomes when creating a kraken2 database.
Added informative text to the display message that occurs when no genome is found by FTD (most often this should be due to faulty naming).
FTD now prompts the user to download missing genomes (without specifying --download parameter) during execution. Else, it instructs the user how missing genomes can be downloaded and where the accession number can be found (such as when adding genomes that are not part of the GTDB rep-set).
Fixed faulty function-referencing outside of object
Added exception (skip/ignore) to nodes that do not have a name (e.g., it occurs when building a database from GTDB)