A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineered for precision, speed, and user-friendliness, with offline functionality post-initialization.
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Refactoring External Database Options and Setup Script Modifications #63
This pull request introduces significant changes to the config.yaml and setup.py files in the nanometa_live project, streamlining external database options and refining the setup process.
Changes in config.yaml
External Database Options:
Commented out the MinusB, EuPathDB, and Viral database entries in external_kraken2_info. This change simplifies the external database selection, focusing on the most utilized databases.
Changes in setup.py
Setup Script Refactoring:
Removed the nanometa-blastdb command from entry_points in setup.py. This adjustment streamlines the setup process, focusing on core functionalities.
This pull request introduces significant changes to the
config.yamlandsetup.pyfiles in thenanometa_liveproject, streamlining external database options and refining the setup process.Changes in
config.yamlMinusB,EuPathDB, andViraldatabase entries inexternal_kraken2_info. This change simplifies the external database selection, focusing on the most utilized databases.Changes in
setup.pynanometa-blastdbcommand fromentry_pointsinsetup.py. This adjustment streamlines the setup process, focusing on core functionalities.