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FPetitprez / webMCP-counter

Shiny app to run MCP-counter and mMCP-counter
GNU General Public License v3.0
2 stars 2 forks source link

file cannot be loaded #17

Open ZQMqingmei opened 2 years ago

ZQMqingmei commented 2 years ago

Ask your question Ask you question as precisely as possible. If this is related to your dataset, do not forget to include key information about it.

my this file cannot be loaded with warning: Maximum upload size exceeded

thanks a lot

FPetitprez commented 2 years ago

Hello, How big is your input file? There is currently a limit of 50Mb for the upload size.

ZQMqingmei commented 2 years ago

Thanks for your reply.DATA downloaded from TCGA-LIHC 371 patients. 114MB

ZQMqingmei commented 2 years ago

Zhang Qingmei has shared a OneDrive for Business file with you. To view it, click the link below. https://connecthkuhk-my.sharepoint.com/:t:/g/personal/qmcheung_connect_hku_hk/EbbrN1N_cvlBpd6nobZ0z9wBhNmHQTrnZMLB3cm_8sqS8A [https://r1.res.office365.com/owa/prem/images/dc-txt_20.png]https://connecthkuhk-my.sharepoint.com/:t:/g/personal/qmcheung_connect_hku_hk/EbbrN1N_cvlBpd6nobZ0z9wBhNmHQTrnZMLB3cm_8sqS8A TCGA-LIHC.txthttps://connecthkuhk-my.sharepoint.com/:t:/g/personal/qmcheung_connect_hku_hk/EbbrN1N_cvlBpd6nobZ0z9wBhNmHQTrnZMLB3cm_8sqS8A

Dear Sir,

Attached please find my file for webMCP-counter.

I am really looking forward to your help.

Thank you so much.

From: Florent Petitprez @.> Sent: Thursday, September 15, 2022 5:13 PM To: FPetitprez/webMCP-counter @.> Cc: Zhang Qingmei @.>; Author @.> Subject: Re: [FPetitprez/webMCP-counter] file cannot be loaded (Issue #17)

Hello, How big is your input file? There is currently a limit of 50Mb for the upload size.

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FPetitprez commented 2 years ago

Hi, The easiest way to have a lighter file without changing anything in the way webMCP-counter will work is to limit your data to the genes that are included in the MCP-counter signatures. You can find them here. webMCP-counter does not analyze the expression of other genes, so if you delete the other lines from your file, it will be much lighter and should be below the 50Mb limit.

FPetitprez commented 2 years ago

The above link contains the signature for human data. If you are using the murine version (mMCP-counter), the signatures are included as Table S2 of the original paper (direct link to the table here.)