search

FPetitprez / webMCP-counter

Shiny app to run MCP-counter and mMCP-counter
GNU General Public License v3.0
2 stars 2 forks source link

Clustering according to sample replicates #20

Open NikitaS64 opened 1 year ago

NikitaS64 commented 1 year ago

Hi,

I'm trying to deconvolute a mouse bulk melanoma mixture file in which I have 12 samples (3 replicates each for 4 treatments) for all the possible cell types contained in mMCP counter. The file uploads and deconvolutes with no issues, but I cannot select which samples I want to have cluster together. The program seems to cluster them itself and I end up with 4 clusters which have 3/3/2/4 data points for each cell type. Is there any way to customize this on the web version?

FPetitprez commented 1 year ago

Hi, Unfortunately this isn't possible on the web app. However, you can download the mMCP-counter estimates and perfom your preferred downstream analyses using another program.