Support for modern epitope prediction tools

FRED-2 / Fred2

Python-based framework for computational immunomics

http://fred-2.github.io/

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Support for modern epitope prediction tools #224

Closed Zethson closed 5 years ago

Zethson commented 5 years ago

Hi,

I am planning on using immunonode's neoepitope script for mhcquant. However, the currently implemented epitope prediction tools don't support enough lengths and alleles for my needs.

Are there any plans of integrating MHCFlurry or MHCNuggets into FRED 2?

@christopher-mohr did you already work on this?

Thanks.

christopher-mohr commented 5 years ago

Hey, so far I didn't start to work on this but it would definitely be nice to have support for these methods in FRED2. Right now I can't give you a timeline for this. Feel free to start... ;)

Zethson commented 5 years ago

I'm almost done with this. Will open PR tomorrow.