Traceback (most recent call last):
File "/soft/OptiType-1.3.2/OptiTypePipeline.py", line 433, in <module>
hlatype = result.iloc[0][["A1", "A2", "B1", "B2", "C1", "C2"]].drop_duplicates().dropna()
File "/usr/local/lib/python3.7/dist-packages/pandas/core/series.py", line 910, in __getitem__
return self._get_with(key)
File "/usr/local/lib/python3.7/dist-packages/pandas/core/series.py", line 958, in _get_with
return self.loc[key]
File "/usr/local/lib/python3.7/dist-packages/pandas/core/indexing.py", line 1767, in __getitem__
return self._getitem_axis(maybe_callable, axis=axis)
File "/usr/local/lib/python3.7/dist-packages/pandas/core/indexing.py", line 1953, in _getitem_axis
return self._getitem_iterable(key, axis=axis)
File "/usr/local/lib/python3.7/dist-packages/pandas/core/indexing.py", line 1594, in _getitem_iterable
keyarr, indexer = self._get_listlike_indexer(key, axis, raise_missing=False)
File "/usr/local/lib/python3.7/dist-packages/pandas/core/indexing.py", line 1552, in _get_listlike_indexer
keyarr, indexer, o._get_axis_number(axis), raise_missing=raise_missing
File "/usr/local/lib/python3.7/dist-packages/pandas/core/indexing.py", line 1654, in _validate_read_indexer
"Passing list-likes to .loc or [] with any missing labels "
KeyError: 'Passing list-likes to .loc or [] with any missing labels is no longer supported, see https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#deprecate-loc-reindex-listlike'
The reason of this error is this line:
hlatype = result.iloc[0][["A1", "A2", "B1", "B2", "C1", "C2"]].drop_duplicates().dropna()
Hello. Today I got this error:
The reason of this error is this line:
hlatype = result.iloc[0][["A1", "A2", "B1", "B2", "C1", "C2"]].drop_duplicates().dropna()
According to docs: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#deprecate-loc-reindex-listlike I modified this line to
reindex
:hlatype = result.iloc[0].reindex(["A1", "A2", "B1", "B2", "C1", "C2"]).drop_duplicates().dropna()
.For now it's working but I need some more tests and other opinions on this.
Thanks for great tool.