HLA class II prediction

FRED-2 / OptiType

Precision HLA typing from next-generation sequencing data

BSD 3-Clause "New" or "Revised" License

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HLA class II prediction #107

Open PKazakova opened 4 years ago

PKazakova commented 4 years ago

Hi, OptiType has been reported as one of the best performing tool for genotyping HLA Class I alleles, but unfortunately, OptiType does not type HLA Class II alleles, which may limit its clinical utility. I wonder if it's just a matter of changing some parameters in OptiTypePipeline.py or is something different. Do you plan a new release with HLA II Class prediction?

serge2016 commented 4 years ago

Hello! I am very interested in it too. Any news? https://github.com/FRED-2/OptiType/issues/51

ibwoo commented 4 years ago

Very excited for this! @andras86 has recently responded in #51 that it will finally arrive soon, but I would love to hear a more detailed response with an estimated timeframe. I'm happy to use it as a pre-release if necessary but a timeframe would help me decide whether I can wait for Optitype or will need to use alternative programs.

yubau1112 commented 4 years ago

I am very interested in it too. I wait for class II prediction. :)

yubau

EugeneEA commented 4 years ago

would be great

serge2016 commented 3 years ago

Hello! Any news?