Biocontainers latest repo uses python3.7 as standard python version which is not compatible with Optitype. Hence container at quay.io was using python3 instead of python2 to run the script resulting in some peculiar errors.
Additions to Dockerfile:
Added Install requirements for razers3 too.
Use a COPY to move data over, install python modules into root.
Removed ENTRYPOINT for CWL compatibility.
Biocontainers latest repo uses python3.7 as standard python version which is not compatible with Optitype. Hence container at quay.io was using python3 instead of python2 to run the script resulting in some peculiar errors.
Additions to Dockerfile: Added Install requirements for razers3 too. Use a COPY to move data over, install python modules into root. Removed ENTRYPOINT for CWL compatibility.