Ways to update hla reference/allele data?

FRED-2 / OptiType

Precision HLA typing from next-generation sequencing data

BSD 3-Clause "New" or "Revised" License

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Ways to update hla reference/allele data? #112

Open ikarus97 opened 4 years ago

ikarus97 commented 4 years ago

Hello, I have been using Docker build of OptiType for my project, and am satisfied by its performance. One concern is that it always use reference sequence & alleles in /data folder of the Docker image.

If I want to use latest HLA DNA sequences & alleles from http://hla.alleles.org/alleles/index.html, is there a way to do this?

I thought about installing OptiType from source, but still needs alleles.h5, though (I don't know how to create this .h5 file).

Thank you!

serge2016 commented 4 years ago

Same question here!

Xiaohuaniu0032 commented 3 years ago

same questions here! the lastest IMGT-HLA database is already the release 3.43.0. https://github.com/ANHIG/IMGTHLA/tree/Latest/fasta

serge2016 commented 3 years ago

We also are waiting for the update...

serge2016 commented 2 years ago

Hello! Any news here?

masen1991 commented 2 years ago

3.14.0 version IMGT-HLA database is out of time now.

serge2016 commented 1 year ago

Any news here?