The pipeline currently generates temporary output files that are named after the current date and time. When the pipeline is launched multiple times in a short period of time by a workflow engine, this results in collisions.
This patch adds the same prefix to the temporary bam files as for the output. Collisions can thus be prevented by using --prefix
The pipeline currently generates temporary output files that are named after the current date and time. When the pipeline is launched multiple times in a short period of time by a workflow engine, this results in collisions.
This patch adds the same prefix to the temporary bam files as for the output. Collisions can thus be prevented by using
--prefix