conda installation issue

FRED-2 / OptiType

Precision HLA typing from next-generation sequencing data

BSD 3-Clause "New" or "Revised" License

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Open OrielResearchCure opened 2 years ago

OrielResearchCure commented 2 years ago

Hello,

I installed optitype using the following command: conda install -c bioconda optitype

No errors were reported. but it seems that the machine doesnt recognize the pacakge:

I executed: which RazerS3 It didn’t return anything

I tried with python 2.7 and python 3.

What am I missing? Thanks, Eila

grasskind commented 2 years ago

Hi Eila,

You can run which razers3 to see the RazerS3 installation. To run the pipeline itself, you can use OptiTypePipeline.py [options]