Closed hartmaier closed 8 years ago
I think I got it...I just saw the other issue discussing the different versions of glpk. I removed v4.59 and installed v4.55 and was able to run the test data without errors. Running my own data now but expect this to solve the problem. Closing issue.
This is my first time running optitype, so forgive me if I missed something obvious. I am getting an odd parsing error. This also occurs with running the test dataset.
Command:
python OptiTypePipeline.py -i ./sample_opti.1.fq ./sample_opti.2.fq --dna -c ./config.ini -v -o ./optitype_work/
Output:
When I open up the MIP solution tmp file it has the format of:
I guess it has to do with the 'c' in the file being treated as integers but I am not sure why. Any ideas?