Docker container is not building

FRED-2 / OptiType

Precision HLA typing from next-generation sequencing data

BSD 3-Clause "New" or "Revised" License

190 stars 75 forks source link

Docker container is not building #65

Open mwalzer opened 7 years ago

mwalzer commented 7 years ago

hdf5 resources are inavailable

mwalzer commented 7 years ago

maybe building from https://hub.docker.com/r/hdfgroup/hdf5lib/ would work?

b-schubert commented 7 years ago

@mwalzer could you try and build the container again. The container hosted at docker hub build correctly.

mwalzer commented 6 years ago

Yeah, now https://support.hdfgroup.org/ftp/HDF5/current18/bin/linux-centos7-x86_64-gcc485/hdf5-1.8.19-linux-centos7-x86_64-gcc485-shared.tar.gz is available again. Still, I think to build from a docker image might be the more stable option.

b-schubert commented 6 years ago

Agreed. Will change the Dockerfile as soon as I find time.

allteaser commented 4 years ago

running docker, the following error occurs: File "/usr/local/bin/OptiType/OptiTypePipeline.py", line 11 SyntaxError: Non-ASCII character '\xc3' in file /usr/local/bin/OptiType/OptiTypePipeline.py on line 12, but no encoding declared; see http://python.org/dev/peps/pep-0263/ for details

allteaser commented 4 years ago

It works when pulled from here