permission error occured when using docker file

[zd200572]

when using docker file, It give me an error info, it seems to be the permission error of mkdir function. I googled and used the solution of add '--previliged=true', but it still doesn't work. My system is Ubuntu 16.04.3 and docker ce. Is there anything I can do to solve it?

Traceback (most recent call last): File "/usr/local/bin/OptiType/OptiTypePipeline.py", line 264, in os.makedirs(out_dir) File "/usr/lib/python2.7/os.py", line 157, in makedirs mkdir(name, mode) OSError: [Errno 13] Permission denied: '/data/2017_12_31_08_56_44'

another error info I encounter is the software installation by bioconda, the error info is ：

0:12:16.95 Generating binary hit matrix. Traceback (most recent call last): File "/home/zjd/miniconda3/envs/python2.7/bin/OptiTypePipeline.py", line 303, in pos, read_details = ht.pysam_to_hdf(bam_paths[0]) File "/home/zjd/miniconda3/envs/python2.7/share/optitype-1.2.1-0/hlatyper.py", line 186, in pysam_to_hdf sam = pysam.AlignmentFile(samfile, sam_or_bam) AttributeError: 'module' object has no attribute 'AlignmentFile'

[b-schubert]

how did you call the docker container? Did you mount a directory of your host system to /data ?

[AAlhendi1707]

same issue here