zwzhangirc
commented
3 weeks ago ======== PRINT NCVAR TYPE ======= VARNAME ::h_morpho VARID :: 13 NCID :: -1 CONNECTED :: T CURR_STKCNT :: -1 XYTPE :: FLOAT ASSOCIATED :: VEC_FLT DIMS :: 2 ATTS :: 4 ======= PRINTED NCVAR TYPE ====== %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% FVCOM Fatal Error! NC_WRITE_VAR: Variable objects ARR_FLT data is NOT assocaited! Stopping FVCOM
os: CENTOS compiler: intel 2015 ifort icc execute the command: mpiexec -np 2 ./fvcom --casename=xinzhi --dbg=7
the errors as follows:
=============MAP INFO============== ID = 1 GM(I)%NSIZE = 4533 GM(I)%LSIZE = 4533 GM(I)%GSIZE = 9045 UBOUND(GM(I)%LOC_2_GL) = 4533 UBOUND(GM(I)%LOC_2_GRID) = 4533 =============MAP INFO============== ID = 2 GM(I)%NSIZE = 4572 GM(I)%LSIZE = 4572 GM(I)%GSIZE = 9045 UBOUND(GM(I)%LOC_2_GL) = 4572
END VEC_FLT_PCOLLECT_IO END NC_WRITE_VAR: STARTING NC_CLOSE Closed File: ./output/xinzhi_0001.nc END NC_CLOSE END NC_WRITE_FILE END DUMP_DATA END AVG ARCHIVE END ARCHIVE START: DUMP_PROBE_DATA END: DUMP_PROBE_DATA dumping to netcdf file: ./output/xinzhi_station_timeseries.nc 2 START: SHUTDOWN CHECK: no msg END: SHUTDOWN CHECK START ARCHIVE_NEST START ASSIGN2BLOCK END ASSIGN2BLOCK START DUMP_NCNEST_FILE IDX= 2 2 RNG= 1 2 STARTING NC_WRITE_FILE ======== PRINT NCFILE TYPE ======= =FILENAME ::./output/node_nest.nc =NCID :: -1 =WRITABLE :: T =OPEN :: F =CONNECTED :: T =INDEFMODE :: F =UNLIMDIMID :: 5 = ===== FILE IO TIME INFO ==== = TMTYPE :: UNKNOWN ======== PRINT NCVAR TYPE ======= THIS NCVAR HAS NOT BEEN ASSOCIATED ======= PRINTED NCVAR TYPE ====== ======== PRINT NCVAR TYPE ======= THIS NCVAR HAS NOT BEEN ASSOCIATED ======= PRINTED NCVAR TYPE ====== !========PREV IO========== ! Day # : 0 ! MicroSecond #: 0 ! (Date Time=1858-11-17T00:00:00.000000Z) !========================== !========NEXT IO========== ! Day # : 0 ! MicroSecond #: 0 ! (Date Time=1858-11-17T00:00:00.000000Z) !========================== !========IO INTERVAL========== ! Day # : 0 ! MicroSecond #: 0 ! (Human Time=d 0000000::h00:m00:s0.000000) !========================== =STK_LEN :: 0 =PREV_STKCNT :: 0 =NEXT_STKCNT :: 1 =MAX_STKCNT :: 0 =PREV_WGHT :: 0.0000000E+00 =NEXT_WGHT :: 0.0000000E+00 =TIMEZONE ::none =END FILE IO TIME TYPE ==== = = FILE OBJECT COUNTS =nDIMS :: 6 =nATTS :: 14 =nVARS :: 29 ====== PRINTED NCFILE TYPE ======
= NC_WRITE_FILE: CONTROL STATE = NC_WRITE_FILE: COLLECT DATA: T = NC_WRITE_FILE: DUMP: T = NC_WRITE_FILE: COLLECTOR: 1 = NC_WRITE_FILE: MYID: 1 = NC_WRITE_FILE: IOPROC: F = NC_WRITE_FILE:USE_MPI_IO_MODE: F = NC_WRITE_FILE: STKRNG: 1 2
STARTING NC_OPEN Opened File: ./output/node_nest.nc END NC_OPEN ! DUMPING DATA TO FILE: node_nest; Records# 1 2 START NC_WRITE_VAR: NC_WRITE_VAR Arguments: ======== PRINT NCVAR TYPE ======= VARNAME ::h_morpho VARID :: 13 NCID :: 12 CONNECTED :: T CURR_STKCNT :: 1048576000 XYTPE :: FLOAT ASSOCIATED :: VEC_FLT DIMS :: 2 ATTS :: 4 ======= PRINTED NCVAR TYPE ====== DUMP= T ; COLLECTDATA= T ; COLLECTOR=001; MYID=001 STKCNT= NONE STKRNG= 1 2 IOSTART= NONE IOCOUNT= NONE IOSTRIDE= NONE FILE DIMENSION COUNT IS:: 2 MEMORY DIMENSION COUNT IS:: 2 ======== PRINT NCVAR TYPE ======= VARNAME ::h_morpho VARID :: 13 NCID :: 12 CONNECTED :: T CURR_STKCNT :: -1 XYTPE :: FLOAT ASSOCIATED :: VEC_FLT DIMS :: 2 ATTS :: 4 ======= PRINTED NCVAR TYPE ====== %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% FVCOM Fatal Error!
Stopping FVCOM make.txt
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% application called MPI_Abort(MPI_COMM_WORLD, -1) - process 0 application called MPI_Abort(MPI_COMM_WORLD, -1) - process 1
=================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 148753 RUNNING AT mu01 = EXIT CODE: 255 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES