search

FZJ-INM1-BDA / siibra-configurations

1 stars 1 forks source link

Add duplicated name check to map #13

Open AhmetNSimsek opened 9 months ago

AhmetNSimsek commented 9 months ago

(transffered from https://jugit.fz-juelich.de/t.dickscheid/brainscapes-configurations/-/merge_requests/98) fixes: https://github.com/FZJ-INM1-BDA/siibra-configurations/issues/67

AhmetNSimsek commented 4 days ago

The list of duplicates as of v1.0a18

 DuplicatedErr(filename='parcellations/bundles_short.json', key='Caudal Middle Frontal - Precentral')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Caudal Middle Frontal – Rostral Middle Frontal')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Caudal Middle Frontal – Superior Frontal')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Fusiform – Lateral Occipital')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Isthmus Cingulate - Precuneus')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Inferior Parietal – Lateral Occipital')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Inferior Parietal - Supramarginal')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Inferior Temporal – Middle Temporal')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Lateral Orbitofrontal – Rostral Middle Frontal')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Lateral Orbitofrontal – Superior Temporal')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Middle Orbitofrontal – Superior Temporal')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Middle Temporal - Supramarginal')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Middle Temporal – Superior Temporal')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Pars Opercularis - Insula')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Pars Opercularis – Superior Frontal')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Pars Orbitalis - Insula')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Posterior Cingulate – Rostral Anterior Cingulate')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Poscentral - Precentral')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Precentral - Insula')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Rostral Middle Frontal – Superior Frontal')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Supramarginal - Insula')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Superior Parietal - Supramarginal')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Superior Temporal – Transverse Temporal')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Pars Triangularis - Insula')
DuplicatedErr(filename='parcellations/bundles_short.json', key='Pars Triangularis – Superior Frontal')
DuplicatedErr(filename='parcellations/julichbrain_v3_0_3.json', key='Temporal-to-Parietal')
DuplicatedErr(filename='parcellations/julichbrain_v3_0_3.json', key='Frontal-to-Temporal')
DuplicatedErr(filename='parcellations/julichbrain_v3_0_3.json', key='Frontal-to-Occipital')
DuplicatedErr(filename='parcellations/julichbrain_v2_9_0.json', key='Ch 123 (Basal Forebrain)')
DuplicatedErr(filename='parcellations/julichbrain_v2_9_0.json', key='Ch 123 (Basal Forebrain) - left hemisphere')
DuplicatedErr(filename='parcellations/julichbrain_v2_9_0.json', key='Ch 123 (Basal Forebrain) - right hemisphere')
DuplicatedErr(filename='parcellations/julichbrain_v2_9_0.json', key='Interposed Nucleus (Cerebellum)')
DuplicatedErr(filename='parcellations/julichbrain_v2_9_0.json', key='Interposed Nucleus (Cerebellum) - left hemisphere')
DuplicatedErr(filename='parcellations/julichbrain_v2_9_0.json', key='Interposed Nucleus (Cerebellum) - right hemisphere')
DuplicatedErr(filename='parcellations/julichbrain_v1_18.json', key='Ch 123 (Basal Forebrain)')
DuplicatedErr(filename='parcellations/julichbrain_v1_18.json', key='Ch 123 (Basal Forebrain) - left hemisphere')
DuplicatedErr(filename='parcellations/julichbrain_v1_18.json', key='Ch 123 (Basal Forebrain) - right hemisphere')
DuplicatedErr(filename='parcellations/julichbrain_v1_18.json', key='CM (Amygdala)')
DuplicatedErr(filename='parcellations/julichbrain_v1_18.json', key='CM (Amygdala) - left hemisphere')
DuplicatedErr(filename='parcellations/julichbrain_v1_18.json', key='CM (Amygdala) - right hemisphere')
DuplicatedErr(filename='parcellations/julichbrain_v1_18.json', key='Interposed Nucleus (Cerebellum)')
DuplicatedErr(filename='parcellations/julichbrain_v1_18.json', key='Interposed Nucleus (Cerebellum) - left hemisphere')
DuplicatedErr(filename='parcellations/julichbrain_v1_18.json', key='Interposed Nucleus (Cerebellum) - right hemisphere')

I think bundles_short is stemming from the configuratiion. I will check and report. Duplicates listed for julich brain 1.18, 2.9, 3.0.3 are known data issues. @xgui3783 shall we blacklist these?

AhmetNSimsek commented 4 days ago

bundles_short is a configuration error. I will push a fix here