v2.14.3

[github-actions[bot]]

Staging Checklist

use incognito browser

home page

General

• [ ] Can access front page
• [ ] Can login to oidc v2 via top-right

Verify testing correct siibra-explorer and siibra-api versions

• [ ] Git hash from [?] -> About matches with the git hash of HEAD of staging
• [ ] Message Expecting {VERSION}, but got {VERSION}, some functionalities may not work as expected does not show

Atlas data specific

• [ ] Human multilevel atlas
  • [ ] on click from home page, MNI152, Julich v2.9 loads without issue
  • [ ] on hover, show correct region name(s)
  • [ ] Parcellation smart chip
  • [ ] show/hide parcellation toggle exists and works
  • [ ] q is a shortcut to show/hide parcellation toggle
  • [ ] info button exists and works
  • [ ] info button shows desc, and link to KG
  • [ ] regional is fine :: select hOC1 right
  • [ ] probabilistic map loads fine
  • [ ] segmentation layer hides
  • [ ] navigate to button exists, and works
  • [ ] Open in KG button exists and works
  • [ ] Description tabs exists and works
  • [ ] Regional features tab exists and works
    • [ ] Receptor density dataset exists and works
    • [ ] Open in KG button exists and works
    • [ ] Preview tab exists and works
    • [ ] fingerprint is shown, interactable
    • [ ] profiles can be loaded, interactable
  • [ ] Connectivity tab exists and works
    • [ ] on opening tab, PMap disappear, colour mapped segmentation appears
    • [ ] on closing tab, PMap reappear, segmentation hides
  • [ ] switching template/parc
  • [ ] mni152 julich brain 29 (big brain) -> big brain julich brain 29
  • [ ] big brain julich brain 29 (long bundle) -> (asks to change template)
  • [ ] in big brain v2.9 (or latest)
  • [ ] high res hoc1, hoc2, hoc3, lam1-6 are visible
  • [ ] pli dataset link
    • [ ] redirects fine
    • [ ] shows fine
  • [ ] fsaverage
  • [ ] can be loaded & visible
• [ ] Waxholm
  • [ ] v4 are visible
  • [ ] on hover, show correct region name(s)
  • [ ] whole mesh loads

Pt Assignments

• [ ] human MNI152 julich brain should work (statistical)
• [ ] rat waxholm v4 should work (labelled)
• [ ] csv can be downloaded
• [ ] big brain & fsaverage shouldn't work

Download atlas

• [ ] human MNI152 julich brain can be downloaded
• [ ] human MNI152 julich brain hoc1 left can be downloaded
• [ ] rat waxholm v4 can be downloaded

saneURL

• [ ] saneurl generation functions properly
  • [ ] try existing key (human), and get unavailable error
  • [ ] try non existing key, and get available
  • [ ] create use key x_tmp_foo and new url works
• [ ] saneUrl redirects to big brain
• [ ] saneUrl redirects to julich brain (colin 27)
• [ ] saneUrl redirects to waxholm v4
• [ ] saneUrl redirects to allen 2017
• [ ] saneUrl redirects to monkey
• [ ] saneUrl redirects to URL that contains annotations

VIP URL

• [ ] vipUrl redirects to human mni152
• [ ] vipUrl redirects mebrains
• [ ] vipUrl redirects to waxholm v4
• [ ] vipUrl redirects allen mouse 2017

plugins

• [ ] jugex plugin works

[github-actions[bot]]

Staging Checklist

use incognito browser

home page

General

• [x] Can access front page
• [ ] Can login to oidc v2 via top-right

Verify testing correct siibra-explorer and siibra-api versions

• [ ] Git hash from [?] -> About matches with the git hash of HEAD of staging
• [ ] Message Expecting {VERSION}, but got {VERSION}, some functionalities may not work as expected does not show

Atlas data specific

• [ ] Human multilevel atlas
  • [x] on click from home page, MNI152, Julich v2.9 loads without issue
  • [x] on hover, show correct region name(s)
  • [x] Parcellation smart chip
  • [x] show/hide parcellation toggle exists and works
  • [x] q is a shortcut to show/hide parcellation toggle
  • [x] info button exists and works
  • [x] info button shows desc, and link to KG
  • [x] regional is fine :: select hOC1 right
  • [x] probabilistic map loads fine
  • [x] segmentation layer hides
  • [x] navigate to button exists, and works
  • [x] Open in KG button exists and works
  • [x] Description tabs exists and works
  • [x] Regional features tab exists and works
    • [x] Receptor density dataset exists and works
    • [x] Open in KG button exists and works
    • [x] Preview tab exists and works
    • [x] fingerprint is shown, interactable
    • [x] profiles can be loaded, interactable
  • [x] Connectivity tab exists and works
    • [x] on opening tab, PMap disappear, colour mapped segmentation appears
    • [x] on closing tab, PMap reappear, segmentation hides
  • [ ] switching template/parc
  • [ ] mni152 julich brain 29 (big brain) -> big brain julich brain 29
  • [ ] big brain julich brain 29 (long bundle) -> (asks to change template)
  • [ ] in big brain v2.9 (or latest)
  • [x] high res hoc1, hoc2, hoc3, lam1-6 are visible
  • [ ] pli dataset link
    • [ ] redirects fine
    • [ ] shows fine
  • [ ] fsaverage
  • [ ] can be loaded & visible
• [ ] Waxholm
  • [ ] v4 are visible
  • [ ] on hover, show correct region name(s)
  • [ ] whole mesh loads

Pt Assignments

• [ ] human MNI152 julich brain should work (statistical)
• [ ] rat waxholm v4 should work (labelled)
• [ ] csv can be downloaded
• [ ] big brain & fsaverage shouldn't work

Download atlas

• [ ] human MNI152 julich brain can be downloaded
• [ ] human MNI152 julich brain hoc1 left can be downloaded
• [ ] rat waxholm v4 can be downloaded

saneURL

• [ ] saneurl generation functions properly
  • [ ] try existing key (human), and get unavailable error
  • [ ] try non existing key, and get available
  • [ ] create use key x_tmp_foo and new url works
• [ ] saneUrl redirects to big brain
• [ ] saneUrl redirects to julich brain (colin 27)
• [ ] saneUrl redirects to waxholm v4
• [ ] saneUrl redirects to allen 2017
• [ ] saneUrl redirects to monkey
• [ ] saneUrl redirects to URL that contains annotations

VIP URL

• [ ] vipUrl redirects to human mni152
• [ ] vipUrl redirects mebrains
• [ ] vipUrl redirects to waxholm v4
• [ ] vipUrl redirects allen mouse 2017

plugins

• [ ] jugex plugin works

[github-actions[bot]]

Staging Checklist

use incognito browser

home page

General

• [x] Can access front page
• [x] Can login to oidc v2 via top-right

Verify testing correct siibra-explorer and siibra-api versions

• [x] Git hash from [?] -> About matches with the git hash of HEAD of staging
• [x] Message Expecting {VERSION}, but got {VERSION}, some functionalities may not work as expected does not show

Atlas data specific

• [ ] Human multilevel atlas
  • [x] on click from home page, MNI152, Julich v2.9 loads without issue
  • [x] on hover, show correct region name(s)
  • [x] Parcellation smart chip
  • [x] show/hide parcellation toggle exists and works
  • [x] q is a shortcut to show/hide parcellation toggle
  • [x] info button exists and works
  • [x] info button shows desc, and link to KG
  • [x] regional is fine :: select hOC1 right
  • [x] probabilistic map loads fine
  • [x] segmentation layer hides
  • [x] navigate to button exists, and works
  • [x] Open in KG button exists and works
  • [x] Description tabs exists and works
  • [x] Regional features tab exists and works
    • [x] Receptor density dataset exists and works
    • [x] Open in KG button exists and works
    • [x] Preview tab exists and works
    • [x] fingerprint is shown, interactable
    • [x] profiles can be loaded, interactable
  • [x] Connectivity tab exists and works
    • [x] on opening tab, PMap disappear, colour mapped segmentation appears
    • [x] on closing tab, PMap reappear, segmentation hides
  • [x] switching template/parc
  • [x] mni152 julich brain 29 (big brain) -> big brain julich brain 29
  • [x] big brain julich brain 29 (long bundle) -> (asks to change template)
  • [x] in big brain v2.9 (or latest)
  • [x] high res hoc1, hoc2, hoc3, lam1-6 are visible
  • [x] pli dataset link
    • [x] redirects fine
    • [x] shows fine
  • [x] fsaverage
  • [x] can be loaded & visible
• [x] Waxholm
  • [x] v4 are visible
  • [x] on hover, show correct region name(s)
  • [x] whole mesh loads

Pt Assignments

• [x] human MNI152 julich brain should work (statistical)
• [x] rat waxholm v4 should work (labelled)
• [x] csv can be downloaded
• [x] big brain & fsaverage shouldn't work

Download atlas

• [x] human MNI152 julich brain can be downloaded
• [x] human MNI152 julich brain hoc1 left can be downloaded
• [x] rat waxholm v4 can be downloaded

saneURL

• [x] saneurl generation functions properly
  • [x] try existing key (human), and get unavailable error
  • [x] try non existing key, and get available
  • [x] create use key x_tmp_foo and new url works
• [x] saneUrl redirects to big brain
• [x] saneUrl redirects to julich brain (colin 27)
• [x] saneUrl redirects to waxholm v4
• [x] saneUrl redirects to allen 2017
• [x] saneUrl redirects to monkey
• [x] saneUrl redirects to URL that contains annotations

VIP URL

• [x] vipUrl redirects to human mni152
• [x] vipUrl redirects mebrains
• [x] vipUrl redirects to waxholm v4
• [x] vipUrl redirects allen mouse 2017

plugins

• [x] jugex plugin works