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FabioBedin / QProMS_App

A Shiny application to perform label free proteomic analysis from start to finish.
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Handle Fragpipe / msfragger table #13

Closed grandrea closed 10 months ago

grandrea commented 1 year ago

Handle Fragpipe intensity output. See attached.

intensity columns START with experiment name (here 1,2,3..)

"Gene" column can be empty combined_protein.txt

grandrea commented 1 year ago

Here it's with "Intensity" but otherwise it can be "MaxLFQ"

grandrea commented 11 months ago

fragpipe contaminants are from CRAPome https://www.thegpm.org/crap/

grandrea commented 11 months ago

The fragpipe default output. Names need not be unique. Default name "combined_protein.tsv" fragpipe_combined_protein.txt

FabioBedin commented 10 months ago

Implemented feature.