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Farre-lab / syntenyPlotteR

R package to draw syntenic plots in 3 different styles
https://farre-lab.github.io/syntenyPlotteR/
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Ideogram not getting colored #8

Open trihim opened 2 weeks ago

trihim commented 2 weeks ago

Hi I am able to run both draw.ideogram and draw.linear commands, but not able to color the ideogram. The reference panel on the side is colored, and syntenic blocks are also visible. Just the syntenic blocks are not colored. I am attaching the file Synteny_error

marta-fb commented 2 weeks ago

Hi,

Could you please past a snippet of your input data?

Thanks Marta

trihim commented 2 weeks ago

Sure. Here is head for synteny data

1 132671951 132710791 chr10 21514603 21554171 + Lemur CHM13 1 207128296 207162385 chr3 184501814 184536188 + Lemur CHM13 1 72384236 72414088 chr15 34878587 34908277 + Lemur CHM13 1 72199356 72225216 chr15 34684952 34710619 + Lemur CHM13 1 230110189 230139177 chr3 117034769 117064049 - Lemur CHM13

And here is for size file

1 286674946 Lemur 2 147489633 Lemur 3 126926352 Lemur 4 117448925 Lemur 5 114043961 Lemur . . . . chr20 66210255 CHM13 chr21 45090682 CHM13 chr22 51324926 CHM13