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FePhyFoFum / phyx

phylogenetics tools for linux (and other mostly posix compliant) computers
blackrim.org
GNU General Public License v3.0
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write correct datatype and symbols for nexus (pxs2nex) #115

Closed josephwb closed 4 years ago

josephwb commented 4 years ago

Currently MULTI (phyx) data written as STANDARD (Nexus), but without symbols (i.e. the alphabet or set of character state labels). Symbols are not required for DNA, PROTEIN, or BINARY (STANDARD, with the default symbol set 0,1). But symbols are needed for morphological data (also considered STANDARD, but with and arbitrary symbol set).

josephwb commented 4 years ago

I believe c2d29735072bdb16c3269e475931ea0a6eb75d2b addresses this.