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FelixBaensch / MORTAR

MOlecule fRagmenTAtion fRamework
MIT License
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Issue with running on Mac OS + M1 processor #1

Closed Kohulan closed 2 years ago

Kohulan commented 2 years ago

Hey @FelixBaensch And @JonasSchaub ,

I have the following version of JAVA,

java 18.0.2 2022-07-19
Java(TM) SE Runtime Environment (build 18.0.2+9-61)
Java HotSpot(TM) 64-Bit Server VM (build 18.0.2+9-61, mixed mode, sharing)

I am getting the following error when running on Mac OS,

java.lang.RuntimeException: java.lang.RuntimeException: Error initializing QuantumRenderer: no suitable pipeline found
    at com.sun.javafx.tk.quantum.QuantumRenderer.getInstance(QuantumRenderer.java:280)
    at com.sun.javafx.tk.quantum.QuantumToolkit.init(QuantumToolkit.java:222)
    at com.sun.javafx.tk.Toolkit.getToolkit(Toolkit.java:260)
    at com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:267)
    at com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:158)
    at com.sun.javafx.application.LauncherImpl.startToolkit(LauncherImpl.java:658)
    at com.sun.javafx.application.LauncherImpl.launchApplication1(LauncherImpl.java:678)
    at com.sun.javafx.application.LauncherImpl.lambda$launchApplication$2(LauncherImpl.java:195)
    at java.base/java.lang.Thread.run(Thread.java:833)
Caused by: java.lang.RuntimeException: Error initializing QuantumRenderer: no suitable pipeline found
    at com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.init(QuantumRenderer.java:94)
    at com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.run(QuantumRenderer.java:124)
    ... 1 more
Exception in thread "main" java.lang.RuntimeException: No toolkit found
    at com.sun.javafx.tk.Toolkit.getToolkit(Toolkit.java:272)
    at com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:267)
    at com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:158)
    at com.sun.javafx.application.LauncherImpl.startToolkit(LauncherImpl.java:658)
    at com.sun.javafx.application.LauncherImpl.launchApplication1(LauncherImpl.java:678)
    at com.sun.javafx.application.LauncherImpl.lambda$launchApplication$2(LauncherImpl.java:195)
    at java.base/java.lang.Thread.run(Thread.java:833)

@JonasSchaub We could look into this issue.

-Kohulan

Kohulan commented 2 years ago

Also, same error on Ubuntu as well.

JonasSchaub commented 2 years ago

Using Ubuntu on the same hardware? We are working on a solution, the JavaFx version needs to be updated because our older version does not work on the M1 processor, apparently. But some code changes are required. Thanks for testing!

Kohulan commented 2 years ago

Nope, Ubuntu is on the server.

Ubuntu 22.04.1 LTS (GNU/Linux 5.15.0-43-generic x86_64)

openjdk version "11.0.16" 2022-07-19
OpenJDK Runtime Environment (build 11.0.16+8-post-Ubuntu-0ubuntu122.04)
OpenJDK 64-Bit Server VM (build 11.0.16+8-post-Ubuntu-0ubuntu122.04, mixed mode, sharing)
FelixBaensch commented 2 years ago

Please check new release: MORTAR v1.0.1.0

Kohulan commented 2 years ago

Hi @FelixBaensch ,

Thanks for the fix. One thing to be noted is that it only works with the x64 version of JAVA on Mac with an M1 processor if someone has an AArch64-based version of JAVA installed on their M1 or Linux systems it will cause the following error.

openjdk 17.0.4.1 2022-08-12
OpenJDK Runtime Environment Temurin-17.0.4.1+1 (build 17.0.4.1+1)
OpenJDK 64-Bit Server VM Temurin-17.0.4.1+1 (build 17.0.4.1+1, mixed mode)

Error:

Kohulans-MacBook-Pro-2:Downloads kohulanrajan$ java -jar -Xms512m -Xmx4g MORTAR-fat-1.0.1.0.jar 
Aug 29, 2022 8:27:04 AM com.sun.javafx.application.PlatformImpl startup
WARNING: Unsupported JavaFX configuration: classes were loaded from 'unnamed module @95b8f41'
Loading library prism_es2 from resource failed: java.lang.UnsatisfiedLinkError: Can't load library: /Users/kohulanrajan/.openjfx/cache/17.0.2-ea/libprism_es2.dylib
java.lang.UnsatisfiedLinkError: Can't load library: /Users/kohulanrajan/.openjfx/cache/17.0.2-ea/libprism_es2.dylib
    at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2393)
    at java.base/java.lang.Runtime.load0(Runtime.java:755)
    at java.base/java.lang.System.load(System.java:1953)
    at com.sun.glass.utils.NativeLibLoader.installLibraryFromResource(NativeLibLoader.java:217)
    at com.sun.glass.utils.NativeLibLoader.loadLibraryFromResource(NativeLibLoader.java:197)
    at com.sun.glass.utils.NativeLibLoader.loadLibraryInternal(NativeLibLoader.java:138)
    at com.sun.glass.utils.NativeLibLoader.loadLibrary(NativeLibLoader.java:54)
    at com.sun.prism.es2.ES2Pipeline.lambda$static$0(ES2Pipeline.java:63)
    at java.base/java.security.AccessController.doPrivileged(AccessController.java:318)
    at com.sun.prism.es2.ES2Pipeline.<clinit>(ES2Pipeline.java:52)
    at java.base/java.lang.Class.forName0(Native Method)
    at java.base/java.lang.Class.forName(Class.java:375)
    at com.sun.prism.GraphicsPipeline.createPipeline(GraphicsPipeline.java:218)
    at com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.init(QuantumRenderer.java:92)
    at com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.run(QuantumRenderer.java:125)
    at java.base/java.lang.Thread.run(Thread.java:833)
Loading library prism_sw from resource failed: java.lang.UnsatisfiedLinkError: Can't load library: /Users/kohulanrajan/.openjfx/cache/17.0.2-ea/libprism_sw.dylib
java.lang.UnsatisfiedLinkError: Can't load library: /Users/kohulanrajan/.openjfx/cache/17.0.2-ea/libprism_sw.dylib
    at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2393)
    at java.base/java.lang.Runtime.load0(Runtime.java:755)
    at java.base/java.lang.System.load(System.java:1953)
    at com.sun.glass.utils.NativeLibLoader.installLibraryFromResource(NativeLibLoader.java:217)
    at com.sun.glass.utils.NativeLibLoader.loadLibraryFromResource(NativeLibLoader.java:197)
    at com.sun.glass.utils.NativeLibLoader.loadLibraryInternal(NativeLibLoader.java:138)
    at com.sun.glass.utils.NativeLibLoader.loadLibrary(NativeLibLoader.java:54)
    at com.sun.prism.sw.SWPipeline.lambda$static$0(SWPipeline.java:43)
    at java.base/java.security.AccessController.doPrivileged(AccessController.java:318)
    at com.sun.prism.sw.SWPipeline.<clinit>(SWPipeline.java:42)
    at java.base/java.lang.Class.forName0(Native Method)
    at java.base/java.lang.Class.forName(Class.java:375)
    at com.sun.prism.GraphicsPipeline.createPipeline(GraphicsPipeline.java:218)
    at com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.init(QuantumRenderer.java:92)
    at com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.run(QuantumRenderer.java:125)
    at java.base/java.lang.Thread.run(Thread.java:833)
Graphics Device initialization failed for :  es2, sw
Error initializing QuantumRenderer: no suitable pipeline found
java.lang.RuntimeException: java.lang.RuntimeException: Error initializing QuantumRenderer: no suitable pipeline found
    at com.sun.javafx.tk.quantum.QuantumRenderer.getInstance(QuantumRenderer.java:283)
    at com.sun.javafx.tk.quantum.QuantumToolkit.init(QuantumToolkit.java:254)
    at com.sun.javafx.tk.Toolkit.getToolkit(Toolkit.java:264)
    at com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:291)
    at com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:163)
    at com.sun.javafx.application.LauncherImpl.startToolkit(LauncherImpl.java:659)
    at com.sun.javafx.application.LauncherImpl.launchApplication1(LauncherImpl.java:679)
    at com.sun.javafx.application.LauncherImpl.lambda$launchApplication$2(LauncherImpl.java:196)
    at java.base/java.lang.Thread.run(Thread.java:833)
Caused by: java.lang.RuntimeException: Error initializing QuantumRenderer: no suitable pipeline found
    at com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.init(QuantumRenderer.java:95)
    at com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.run(QuantumRenderer.java:125)
    ... 1 more
Exception in thread "main" java.lang.RuntimeException: No toolkit found
    at com.sun.javafx.tk.Toolkit.getToolkit(Toolkit.java:276)
    at com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:291)
    at com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:163)
    at com.sun.javafx.application.LauncherImpl.startToolkit(LauncherImpl.java:659)
    at com.sun.javafx.application.LauncherImpl.launchApplication1(LauncherImpl.java:679)
    at com.sun.javafx.application.LauncherImpl.lambda$launchApplication$2(LauncherImpl.java:196)
    at java.base/java.lang.Thread.run(Thread.java:833)

-Kohulan

JonasSchaub commented 2 years ago

Dear Kohulan, thanks for testing and glad that it works (on 64 bit)!

MORTAR does not run on any 32 bit platforms, not just Mac with an M1 processor. This was a deliberate choice because open JDks like Adoptium and Liberica do not support JavaFx on 32 bit systems. We would have to build and ship our own JDK or ship and import a separate JavaFX SDK to make this work and that is not feasible for us. People who desperately need to make this work will have to use the fat JAR and build their own environment with JavaFX.

@FelixBaensch, did I state this correctly?

Kohulan commented 2 years ago

Dear @JonasSchaub ,

Ok, We cannot do that for different types of OS platforms. But it looks like MORTAR won't work on any Linux/macOS which runs on an ARC 64-bit processor with an AARC64-based Java version installed. So if someone likes to use MORTAR then they have to install JAVA 64bit version instead of the AARC64 version.

A small statement about this on the README would be helpful.

Cheers,

JonasSchaub commented 2 years ago

But everyone with an aarch64 architecture can also use the x64bit JDK without problems? Yes, I will add a statement in readme and tutorial.

FelixBaensch commented 2 years ago

Dear @Kohulan,

thank you for testing. If I can fix it easily, I'll send you a test version privately.

Dear @JonasSchaub,

Dear Kohulan, thanks for testing and glad that it works (on 64 bit)!

MORTAR does not run on any 32 bit platforms, not just Mac with an M1 processor. This was a deliberate choice because open JDks like Adoptium and Liberica do not support JavaFx on 32 bit systems. We would have to build and ship our own JDK or ship and import a separate JavaFX SDK to make this work and that is not feasible for us. People who desperately need to make this work will have to use the fat JAR and build their own environment with JavaFX.

@FelixBaensch, did I state this correctly?

that's not quite true. As far as I know, OpenJDKs and JavaFX are also available for the x86 architecture. But we have deliberately decided against this architecture. However, as you have already seen, this is not the point that Kohulan is addressing with the lack of AArch64 support for Linux and Mac.

Cheers, Felix

JonasSchaub commented 2 years ago

Yes, I misunderstood the point about the AArch64 architecture, sorry 🙈

FelixBaensch commented 2 years ago

Please check new release: MORTAR v1.0.2.0

Kohulan commented 2 years ago

Hi @FelixBaensch ,

The new version of MORTAR works with the AARCH64 version of Java,

openjdk version "18.0.2" 2022-07-19
OpenJDK Runtime Environment (build 18.0.2+9-61)
OpenJDK 64-Bit Server VM (build 18.0.2+9-61, mixed mode, sharing)

But it is not working with the normal 64bit version of Java.

openjdk version "17.0.4.1" 2022-08-12
OpenJDK Runtime Environment Temurin-17.0.4.1+1 (build 17.0.4.1+1)
OpenJDK 64-Bit Server VM Temurin-17.0.4.1+1 (build 17.0.4.1+1, mixed mode, sharing)

Error,

Kohulans-MacBook-Pro-2:Downloads kohulanrajan$ java -Xmx4g -jar MORTAR-fat-1.0.2.0.jar 
Aug 30, 2022 10:39:54 AM com.sun.javafx.application.PlatformImpl startup
WARNING: Unsupported JavaFX configuration: classes were loaded from 'unnamed module @2d58d9ed'
Loading library prism_es2 from resource failed: java.lang.UnsatisfiedLinkError: Can't load library: /Users/kohulanrajan/.openjfx/cache/17.0.2-ea/libprism_es2.dylib
java.lang.UnsatisfiedLinkError: Can't load library: /Users/kohulanrajan/.openjfx/cache/17.0.2-ea/libprism_es2.dylib
    at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2393)
    at java.base/java.lang.Runtime.load0(Runtime.java:755)
    at java.base/java.lang.System.load(System.java:1953)
    at com.sun.glass.utils.NativeLibLoader.installLibraryFromResource(NativeLibLoader.java:217)
    at com.sun.glass.utils.NativeLibLoader.loadLibraryFromResource(NativeLibLoader.java:197)
    at com.sun.glass.utils.NativeLibLoader.loadLibraryInternal(NativeLibLoader.java:138)
    at com.sun.glass.utils.NativeLibLoader.loadLibrary(NativeLibLoader.java:54)
    at com.sun.prism.es2.ES2Pipeline.lambda$static$0(ES2Pipeline.java:63)
    at java.base/java.security.AccessController.doPrivileged(AccessController.java:318)
    at com.sun.prism.es2.ES2Pipeline.<clinit>(ES2Pipeline.java:52)
    at java.base/java.lang.Class.forName0(Native Method)
    at java.base/java.lang.Class.forName(Class.java:375)
    at com.sun.prism.GraphicsPipeline.createPipeline(GraphicsPipeline.java:218)
    at com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.init(QuantumRenderer.java:92)
    at com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.run(QuantumRenderer.java:125)
    at java.base/java.lang.Thread.run(Thread.java:833)
Loading library prism_sw from resource failed: java.lang.UnsatisfiedLinkError: Can't load library: /Users/kohulanrajan/.openjfx/cache/17.0.2-ea/libprism_sw.dylib
java.lang.UnsatisfiedLinkError: Can't load library: /Users/kohulanrajan/.openjfx/cache/17.0.2-ea/libprism_sw.dylib
    at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2393)
    at java.base/java.lang.Runtime.load0(Runtime.java:755)
    at java.base/java.lang.System.load(System.java:1953)
    at com.sun.glass.utils.NativeLibLoader.installLibraryFromResource(NativeLibLoader.java:217)
    at com.sun.glass.utils.NativeLibLoader.loadLibraryFromResource(NativeLibLoader.java:197)
    at com.sun.glass.utils.NativeLibLoader.loadLibraryInternal(NativeLibLoader.java:138)
    at com.sun.glass.utils.NativeLibLoader.loadLibrary(NativeLibLoader.java:54)
    at com.sun.prism.sw.SWPipeline.lambda$static$0(SWPipeline.java:43)
    at java.base/java.security.AccessController.doPrivileged(AccessController.java:318)
    at com.sun.prism.sw.SWPipeline.<clinit>(SWPipeline.java:42)
    at java.base/java.lang.Class.forName0(Native Method)
    at java.base/java.lang.Class.forName(Class.java:375)
    at com.sun.prism.GraphicsPipeline.createPipeline(GraphicsPipeline.java:218)
    at com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.init(QuantumRenderer.java:92)
    at com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.run(QuantumRenderer.java:125)
    at java.base/java.lang.Thread.run(Thread.java:833)
Graphics Device initialization failed for :  es2, sw
Error initializing QuantumRenderer: no suitable pipeline found
java.lang.RuntimeException: java.lang.RuntimeException: Error initializing QuantumRenderer: no suitable pipeline found
    at com.sun.javafx.tk.quantum.QuantumRenderer.getInstance(QuantumRenderer.java:283)
    at com.sun.javafx.tk.quantum.QuantumToolkit.init(QuantumToolkit.java:254)
    at com.sun.javafx.tk.Toolkit.getToolkit(Toolkit.java:264)
    at com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:291)
    at com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:163)
    at com.sun.javafx.application.LauncherImpl.startToolkit(LauncherImpl.java:659)
    at com.sun.javafx.application.LauncherImpl.launchApplication1(LauncherImpl.java:679)
    at com.sun.javafx.application.LauncherImpl.lambda$launchApplication$2(LauncherImpl.java:196)
    at java.base/java.lang.Thread.run(Thread.java:833)
Caused by: java.lang.RuntimeException: Error initializing QuantumRenderer: no suitable pipeline found
    at com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.init(QuantumRenderer.java:95)
    at com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.run(QuantumRenderer.java:125)
    ... 1 more
Exception in thread "main" java.lang.RuntimeException: No toolkit found
    at com.sun.javafx.tk.Toolkit.getToolkit(Toolkit.java:276)
    at com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:291)
    at com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:163)
    at com.sun.javafx.application.LauncherImpl.startToolkit(LauncherImpl.java:659)
    at com.sun.javafx.application.LauncherImpl.launchApplication1(LauncherImpl.java:679)
    at com.sun.javafx.application.LauncherImpl.lambda$launchApplication$2(LauncherImpl.java:196)
    at java.base/java.lang.Thread.run(Thread.java:833)
FelixBaensch commented 2 years ago

Dear @Kohulan,

please check new release for a x64 and a specific AArch64 jar: MORTAR v1.0.3.0

Kohulan commented 2 years ago

Dear @FelixBaensch ,

Thanks a lot now the new versions are working.

-Kohulan

FelixBaensch commented 2 years ago

Dear @Kohulan,

thanks for testing the new versions.

Cheers, Felix