pipe with bismark_methylation_extractor

FelixKrueger / Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

http://felixkrueger.github.io/Bismark/

GNU General Public License v3.0

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Open jksr opened 3 months ago

jksr commented 3 months ago

I wonder if it is possible to use pipe as input to bismark_methylation_extractor instead of file? something like

samtools view bam.bam|head -1| bismark_methylation_extractor

FelixKrueger commented 3 months ago

I am afraid this is not implemented :(