SNAKEMAKE wrapper: How to add multicore?

FelixKrueger / Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

http://felixkrueger.github.io/Bismark/

GNU General Public License v3.0

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SNAKEMAKE wrapper: How to add multicore? #706

Open kenji-yt opened 3 weeks ago

kenji-yt commented 3 weeks ago

Asking here as I don't know where else:

I would like to use parallel processing with the snakemake wrapper for Bismark. From the wrapper documentation it did not become clear what I should do. I suspect we need to fill something in params, probably related to "--multicore: bismark parallel execution" but I am unsure how to pass this to the wrapper.

Any help would be appreciated. -Kenji

FelixKrueger commented 2 weeks ago

I'll leave this here for someone else to comment as I am not a snake make person myself. Good luck!