FelixKrueger / TrimGalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
GNU General Public License v3.0
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SOLiD sequencing data processing #118

Closed dahun73 closed 3 years ago

dahun73 commented 3 years ago

Hello :)

I'm trying to handle SOLiD sequencing data. But I have one question. In recent version of TrimGalore, it does not support SOLiD sequencing data. So I just want to trim adapter sequences. In this case, Does TrimGalore support standard SOLiD adapter sequences? If not, should I put in the specific adapter sequences.

Thank you Dahun

FelixKrueger commented 3 years ago

Hi Dahun,

I don't think I heard the term SOLiD since 2012 or so :). I am afraid Trim Galore does not support SOLiD trimming, and we have no plans to add support for it. You can however use Cutadapt for it, please see here: https://cutadapt.readthedocs.io/en/v1.15/colorspace.html#colorspace-reads. Good luck!

dahun73 commented 3 years ago

Thank you so much for your help :)

Have a good day!!