search

FelixKrueger / TrimGalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
GNU General Public License v3.0
467 stars 151 forks source link

SOLiD sequencing data processing #118

Closed dahun73 closed 3 years ago

dahun73 commented 3 years ago

Hello :)

I'm trying to handle SOLiD sequencing data. But I have one question. In recent version of TrimGalore, it does not support SOLiD sequencing data. So I just want to trim adapter sequences. In this case, Does TrimGalore support standard SOLiD adapter sequences? If not, should I put in the specific adapter sequences.

Thank you Dahun

FelixKrueger commented 3 years ago

Hi Dahun,

I don't think I heard the term SOLiD since 2012 or so :). I am afraid Trim Galore does not support SOLiD trimming, and we have no plans to add support for it. You can however use Cutadapt for it, please see here: https://cutadapt.readthedocs.io/en/v1.15/colorspace.html#colorspace-reads. Good luck!

dahun73 commented 3 years ago

Thank you so much for your help :)

Have a good day!!