Closed vkkodali closed 2 years ago
Trim Galore doesn't explicitely handle FastA format, but there is a chance that it will work nevertheless as I think Cutadapt (which does the trimming itself) should auto-detect the file format. Otherwise there are numerous options online to convert FastA to FastQ very quickly.
If you don't want to perform quality trimming you can just set -q 0
, which should only trim adapter sequences. I hope this helps.
Is there a way to run TrimGalore on FASTA input files? I am only in interested in automatic detection of the adapters and trimming them without quality trimming.