I am using Trimgalore 0.6.7 from galaxy environment and getting the following error, it would grateful if anyone can help me on this.
Traceback (most recent call last):
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/lib/galaxy/jobs/runners/init.py", line 538, in _finish_or_resubmit_job
self.sa_session.flush()
File "", line 2, in flush
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/orm/session.py", line 3363, in flush
self._flush(objects)
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/orm/session.py", line 3503, in _flush
transaction.rollback(_capture_exception=True)
File "/mnt/gpfs1/home/scgalaxy01/galaxy_2201/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/util/langhelpers.py", line 70, in exit
compat.raise(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_2201/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/util/compat.py", line 207, in raise
raise exception
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/orm/session.py", line 3463, in _flush
flush_context.execute()
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/orm/unitofwork.py", line 456, in execute
rec.execute(self)
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/orm/unitofwork.py", line 630, in execute
util.preloaded.orm_persistence.save_obj(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/orm/persistence.py", line 236, in save_obj
_emit_update_statements(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/orm/persistence.py", line 1000, in _emit_update_statements
c = connection._execute_20(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1614, in _execute_20
return meth(self, args_10style, kwargs_10style, execution_options)
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/sql/elements.py", line 325, in _execute_on_connection
return connection._execute_clauseelement(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1481, in _execute_clauseelement
ret = self._execute_context(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1845, in _execute_context
self._handle_dbapi_exception(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 2030, in _handle_dbapiexception
util.raise(exc_info[1], with_traceback=exc_info[2])
File "/mnt/gpfs1/home/scgalaxy01/galaxy_2201/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/util/compat.py", line 207, in raise
raise exception
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1802, in _execute_context
self.dialect.do_execute(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 732, in do_execute
cursor.execute(statement, parameters)
UnicodeEncodeError: 'ascii' codec can't encode character '\xb5' in position 2492: ordinal not in range(128)
I am using Trimgalore 0.6.7 from galaxy environment and getting the following error, it would grateful if anyone can help me on this. Traceback (most recent call last): File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/lib/galaxy/jobs/runners/init.py", line 538, in _finish_or_resubmit_job self.sa_session.flush() File "", line 2, in flush
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/orm/session.py", line 3363, in flush
self._flush(objects)
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/orm/session.py", line 3503, in _flush
transaction.rollback(_capture_exception=True)
File "/mnt/gpfs1/home/scgalaxy01/galaxy_2201/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/util/langhelpers.py", line 70, in exit
compat.raise(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_2201/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/util/compat.py", line 207, in raise
raise exception
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/orm/session.py", line 3463, in _flush
flush_context.execute()
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/orm/unitofwork.py", line 456, in execute
rec.execute(self)
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/orm/unitofwork.py", line 630, in execute
util.preloaded.orm_persistence.save_obj(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/orm/persistence.py", line 236, in save_obj
_emit_update_statements(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/orm/persistence.py", line 1000, in _emit_update_statements
c = connection._execute_20(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1614, in _execute_20
return meth(self, args_10style, kwargs_10style, execution_options)
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/sql/elements.py", line 325, in _execute_on_connection
return connection._execute_clauseelement(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1481, in _execute_clauseelement
ret = self._execute_context(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1845, in _execute_context
self._handle_dbapi_exception(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 2030, in _handle_dbapiexception
util.raise(exc_info[1], with_traceback=exc_info[2])
File "/mnt/gpfs1/home/scgalaxy01/galaxy_2201/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/util/compat.py", line 207, in raise
raise exception
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1802, in _execute_context
self.dialect.do_execute(
File "/mnt/gpfs1/home/scgalaxy01/galaxy_22_01/galaxy/.venv/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 732, in do_execute
cursor.execute(statement, parameters)
UnicodeEncodeError: 'ascii' codec can't encode character '\xb5' in position 2492: ordinal not in range(128)