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FelixKrueger / TrimGalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
GNU General Public License v3.0
459 stars 149 forks source link

Trim-galore through Bioconda requires workaround for M1 Macs. #168

Closed trev-f closed 1 year ago

trev-f commented 1 year ago

Installing cutadapt on an M1 Mac requires a workaround as documented in cutadapt's issues. Installing trim galore on an M1 Mac required a similar workaround for me:

CONDA_SUBDIR=osx-64 conda create -n trimgalore -c bioconda -c conda-forge trim-galore=0.6.10

I am not sure if explicitly supplying channel names and trim galore version is required, but this command works.

FelixKrueger commented 1 year ago

Many thanks for mentioning and cross-referencing this here!