Closed vkkodali closed 11 months ago
As far as I can see the version of Cutadapt has nothing to do with the Trim Galore recipe on bioconda:
https://github.com/bioconda/bioconda-recipes/blob/master/recipes/trim-galore/meta.yaml
Indeed, when running mamba install trim-galore
into a brand new environment I just got the following:
trim_galore: version 0.6.10
...
Cutadapt version: 4.4
single-core operation.
igzip command line interface 2.30.0
igzip detected. Using igzip for decompressing
What did you do?
Thanks, apparently the conda installation on our work machines is ancient (4.8.2). That's the reason why it was defaulting to an older version of cutadapt
. I was able to fix it by using the latest version of miniconda
.
Installing
trim_galore
using conda installs v1.18 ofcutadapt
when the latest version is 4.4:Can you please update the conda recipe to install a more up-to-date version of
cutadapt
?