Relatively new to everything that isn't Windows I'm afraid.. can anyone help me out here?
(kraken2) martin@martin-VirtualBox:~$ mamba install -c bioconda trim-galore
Looking for: ['trim-galore']
bioconda/linux-64 Using cache
bioconda/noarch Using cache
warning libmamba Cache file "/home/martin/miniconda3/pkgs/cache/47929eba.json" was modified by another program
pkgs/main/linux-64 (check zst) Checked 0.1s
warning libmamba Cache file "/home/martin/miniconda3/pkgs/cache/3e39a7aa.json" was modified by another program
pkgs/main/noarch (check zst) Checked 0.0s
warning libmamba Cache file "/home/martin/miniconda3/pkgs/cache/2ce54b42.json" was modified by another program
pkgs/r/linux-64 (check zst) Checked 0.0s
warning libmamba Cache file "/home/martin/miniconda3/pkgs/cache/4ea078d6.json" was modified by another program
pkgs/r/noarch (check zst) Checked 0.0s
pkgs/main/noarch 697.5kB @ 305.7kB/s 2.3s
pkgs/r/noarch 1.7MB @ 400.1kB/s 4.4s
pkgs/r/linux-64 1.5MB @ 339.9kB/s 4.5s
pkgs/main/linux-64 5.4MB @ 1.0MB/s 5.4s
Pinned packages:
- python 3.9.*
warning libmamba Added empty dependency for problem type SOLVER_RULE_UPDATE
Could not solve for environment specs
The following packages are incompatible
└─ trim-galore is installable with the potential options
├─ trim-galore [0.4.1|0.4.5|...|0.6.9] would require
│ └─ cutadapt with the potential options
│ ├─ cutadapt [1.10|1.11|...|1.9.1] would require
│ │ └─ python [2.7* |>=2.7,<2.8.0a0 ], which can be installed;
│ ├─ cutadapt [1.10|1.11|...|1.9.1] would require
│ │ └─ python 3.4* , which does not exist (perhaps a missing channel);
│ ├─ cutadapt [1.10|1.11|...|1.9.1] would require
│ │ └─ python [3.5* |>=3.5,<3.6.0a0 ], which can be installed;
│ ├─ cutadapt [1.13|1.14|...|2.6] would require
│ │ └─ python [3.6* |>=3.6,<3.7.0a0 ], which can be installed;
│ ├─ cutadapt [1.18|2.0|...|2.6] would require
│ │ └─ python >=3.7,<3.8.0a0 , which can be installed;
│ ├─ cutadapt [2.10|2.9|...|3.5] would require
│ │ └─ python_abi 3.6.* *_cp36m, which does not exist (perhaps a missing channel);
│ ├─ cutadapt [2.10|2.9|...|4.0] would require
│ │ └─ python_abi 3.7.* *_cp37m, which does not exist (perhaps a missing channel);
│ ├─ cutadapt [2.10|3.0|...|4.0] would require
│ │ └─ python_abi 3.8.* *_cp38, which does not exist (perhaps a missing channel);
│ ├─ cutadapt [2.7|2.8] would require
│ │ └─ xopen >=0.8.4 , which does not exist (perhaps a missing channel);
│ ├─ cutadapt [3.3|3.4|...|4.0] would require
│ │ └─ python_abi 3.9.* *_cp39, which does not exist (perhaps a missing channel);
│ └─ cutadapt [4.1|4.2|4.3|4.4|4.5] would require
│ └─ libgcc-ng >=12 , which does not exist (perhaps a missing channel);
└─ trim-galore [0.4.1|0.4.3|0.4.4|0.4.5] would require
└─ perl 5.22.0* , which does not exist (perhaps a missing channel).
if I try to install cutadapt first i get a similar error. this is on a Ubuntu 20 machine with a python=3.9 conda environment
Relatively new to everything that isn't Windows I'm afraid.. can anyone help me out here?
if I try to install cutadapt first i get a similar error. this is on a Ubuntu 20 machine with a python=3.9 conda environment
thanks for any help M